Extract Bioschemas #83

	name: Extract Bioschemas

	on:
	workflow_dispatch:
	schedule:
	- cron: "0 0 * * 0"
	push:
	paths:
	- '*.groovy'

	jobs:
	bioschemas:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	fetch-depth: 0

	- name: Install groovy
	run: \|
	sudo apt update
	sudo apt install groovy openjdk-17-jre-headless

	- name: Extract Bioschemas
	run: \|
	export JAVA_HOME=/usr/lib/jvm/java-17-openjdk-amd64/
	groovy -version
	groovy extractBioschemas.groovy > datasets.ttl
	groovy extractBioschemas_KB.groovy > biomax.ttl

	- name: Commit Turtle
	run: \|
	git config --global user.name 'GitHub Action'
	git config --global user.email '[email protected]'
	git add *.ttl
	if git diff --exit-code --staged; then
	echo "No changes"
	else
	git commit -m 'Extracted new Bioschemas data as Turtle'
	git push
	fi

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