typos and minor prot-DNA.md

software/haddock3/haddock3-manual/src/docking_scenarios/prot-DNA.md

@@ -1,14 +1,14 @@
-## Protein DNA docking
+## Protein-DNA docking
 
 Haddock3 can also deal with nucleic acids, such as DNA and RNA molecules.
-In such senario, various important parameters must be set, allowing to:
+In this scenario, it is important to adjust the values of the following parameters from their defaults, as the default settings are generally not suitable:
 - keep the dielectric constant constant: `dielec = "cdie"`
-- set the dielectric constant to an higher value: `epsilon = 78`
-- remove the desolvation term from the scroing function, otherwise having a too strong influence due to the phosphate groups: `w_desolv = 0`.
-- automatically generate restraints allowing to keep the double stranded DNA 3' and 5' ends together: `dnarest_on = true`.
+- set the dielectric constant to a higher value: `epsilon = 78`
+- remove the desolvation term from the scoring function (as otherwise this term exerts an excessively strong influence due to the presence of phosphate groups): `w_desolv = 0`.
+- automatically generate restraints allowing to keep the double-stranded DNA 3' and 5' ends together: `dnarest_on = true`.
 
 
-Here are some examples:
+Here are some examples of configuration files specifically designed for protein-DNA docking:
 - using a final energy minimisation step: [docking-protein-DNA-full.cfg](https://github.com/haddocking/haddock3/blob/main/examples/docking-protein-DNA/docking-protein-DNA-full.cfg)
 - refining the interface using MD in a solvent shell: [docking-protein-DNA-mdref-full.cfg](https://github.com/haddocking/haddock3/blob/main/examples/docking-protein-DNA/docking-protein-DNA-mdref-full.cfg)
 - with an intermediate clustering step after rigidbody docking: [docking-protein-DNA-cltsel-full.cfg](https://github.com/haddocking/haddock3/blob/main/examples/docking-protein-DNA/docking-protein-DNA-cltsel-full.cfg)