Fix tests

hallamlab · Jun 1, 2022 · d88ae4d · d88ae4d
1 parent 5eb5a4a
commit d88ae4d
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Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/tests/test_commands.py b/tests/test_commands.py
@@ -430,12 +430,12 @@ def test_update(self):
         self.assertTrue(test_refpkg.svc is not None)
         return
 
-    def test_tmp(self):
-        from treesapp import commands
-        os.chdir("/home/connor/Desktop/NrfA")
-        cmd = "-i nrfA_refseq-protein-212.hits99.fasta -c nrfA --headless --fast -o nrfA_S1 --accession2lin nrfA_refseq-protein-212.hits99.acc_id_lin_map2.tsv --overwrite -n 8"
-        commands.create(cmd.split())
-        return
+    # def test_tmp(self):
+    #     from treesapp import commands
+    #     os.chdir("")
+    #     cmd = ""
+    #     commands.create(cmd.split())
+    #     return
 
 
 if __name__ == '__main__':

diff --git a/tests/test_update_refpkg.py b/tests/test_update_refpkg.py
@@ -37,7 +37,7 @@ def test_simulate_entrez_records(self):
         fa.header_registry = register_headers(list(fa.fasta_dict.keys()))
         lin_map = {"AB-750_E14_NODE_11_length_29119_cov_8.74474_ID_15_7": "d__Bacteria;p__Proteobacteria",
                    "2509738965_Desulfomonile_tiedjei_DCB|HgcB|1_200": "d__Bacteria; p__Proteobacteria; c__Deltaproteobacteria; o__Syntrophobacterales; f__Syntrophaceae"}
-        fa.change_dict_keys("num")
+        fa.change_dict_keys("num_id")
 
         # Test to ensure sequences with same prefix have different EntrezRecord instances
         entrez_records = simulate_entrez_records(fasta_records=fa, seq_lineage_map=lin_map)