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@interpretAMR

interpretAMR

This is the home of the AMR Rules project on GitHub.

Our goal is to develop interpretive standards for AMR genotypes, akin to the interpretive standards developed by EUCAST and CLSI for antimicrobial susceptibility phenotyping.

An overview of the concept, with example data structures and code, is available in the AMRrules repository.

We are partnering with ESGEM, the ESCMID Study Group on Epidemiological Markers, to form an ESGEM-AMR Working Group to curate organism-specific rule sets. Membership of the working group is open to anyone with relevant expertise, you do not have to be an ESGEM member.

If you would like to get involved, please:

  1. Consider registering to attend one of the intro sessions to find out if this is the group for you:
  • Tues 14 May 17:00 UK / 9:00 Seattle / 12:00 Boston
  • Weds 15 May 9:00 UK / 15:00 Hanoi / 18:00 Melbourne
  1. If you decide you want to join the ESGEM-AMR working group please register your interest, and let us know what organism/s you have expertise in, using this form.

Popular repositories Loading

  1. AMRrules AMRrules Public

    Forked from katholt/AMRrules

    Interpretative standards for AMR genotypes

    Python 14

  2. AMRrulesCuration AMRrulesCuration Public

    4 2

  3. AMRgen AMRgen Public

    The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating ge…

    R 2

  4. .github .github Public

  5. datacuration datacuration Public

    HTML 1

Repositories

Showing 5 of 5 repositories
  • AMRgen Public

    The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating genotype-phenotype associations.

    interpretAMR/AMRgen’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Dec 24, 2024
  • interpretAMR/AMRrulesCuration’s past year of commit activity
    4 GPL-3.0 2 0 0 Updated Dec 13, 2024
  • datacuration Public
    interpretAMR/datacuration’s past year of commit activity
    HTML 0 GPL-3.0 1 0 1 Updated Nov 29, 2024
  • AMRrules Public Forked from katholt/AMRrules

    Interpretative standards for AMR genotypes

    interpretAMR/AMRrules’s past year of commit activity
    Python 14 GPL-3.0 1 0 0 Updated Jul 16, 2024
  • .github Public
    interpretAMR/.github’s past year of commit activity
    0 0 0 0 Updated Apr 24, 2024

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