Circle-Map v1.1.3
New release that fixes some bugs in the code and changes the default parameter settings:
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Bug fixed on the graph construction step: This release fixes a bug that was making Circle-Map very slow for DNA circles that were sequenced at very high depth. The error on the code caused that graph paths with very low probability were keep in some cases, making the code very slow. In an extreme case, the runtime was gone from >72h to 1h, while still producing almost identical results.
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The "minimum soft-clipped length" to attemp realignment has been set to 8. Before it was set to 4, and this causes a small decrease in precison, which could cause problems in very big datasets. Hence, the default is changed to 8 now.