[MRG] Vectorize recording during integrate
#1555
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| chores: | |
| name: Chores | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: true | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| architecture: 'x64' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[dev]" | |
| - name: Check formatting with black | |
| id: black | |
| if: always() # Run this step even if the previous one fails | |
| run: | | |
| black --check jaxley tests | |
| - name: Check imports with isort | |
| id: isort | |
| if: always() # Run this step even if the previous one fails | |
| run: | | |
| isort -c jaxley tests | |
| - name: Check license headers | |
| id: license | |
| if: always() # Run this step even if the previous one fails | |
| run: | | |
| expected_header_1="# This file is part of Jaxley, a differentiable neuroscience simulator. Jaxley is" | |
| expected_header_2="# licensed under the Apache License Version 2.0, see <https://www.apache.org/licenses/>" | |
| exit_code=0 | |
| while IFS= read -r file; do | |
| # Extract the first two lines of the file | |
| file_header_1=$(head -n 1 "$file") | |
| file_header_2=$(head -n 2 "$file" | tail -n 1) | |
| # Compare the first line | |
| if [ "$file_header_1" != "$expected_header_1" ]; then | |
| echo "❌ Missing or incorrect license header in $file" | |
| exit 1 | |
| fi | |
| # Compare the second line | |
| if [ "$file_header_2" != "$expected_header_2" ]; then | |
| echo "❌ Missing or incorrect license header in $file" | |
| exit 1 | |
| fi | |
| done < <(find jaxley tests -name "*.py" -type f) | |
| if [ $exit_code -ne 0 ]; then | |
| exit 1 | |
| fi | |
| - name: Ensure that the changelog was updated | |
| id: changelog | |
| if: github.event_name == 'pull_request' # Only run on pull requests | |
| run: | | |
| # Ensure the main branch is up-to-date | |
| git fetch origin main | |
| # Check if CHANGELOG.md was updated | |
| changed_files=$(git diff --name-only origin/main) | |
| if echo "$changed_files" | grep -q 'CHANGELOG.md'; then | |
| echo "CHANGELOG.md was updated" | |
| else | |
| echo "CHANGELOG.md was not updated. Please add your changes if significant. Otherwise, this check can be safely ignored." | |
| exit 1 | |
| fi | |
| - name: Final check | |
| if: always() # Run this step even if the previous one fails | |
| run: | | |
| failed_checks=() | |
| if [[ "${{ steps.black.outcome }}" != "success" ]]; then | |
| failed_checks+=("black formatting") | |
| fi | |
| if [[ "${{ steps.isort.outcome }}" != "success" ]]; then | |
| failed_checks+=("isort imports") | |
| fi | |
| if [[ "${{ steps.license.outcome }}" != "success" ]]; then | |
| failed_checks+=("license headers") | |
| fi | |
| if [[ "${{ steps.changelog.outcome }}" != "success" && "${{ github.event_name }}" == "pull_request" ]]; then | |
| failed_checks+=("changelog update") | |
| fi | |
| if (( ${#failed_checks[@]} > 0 )); then | |
| echo "❌ The following checks failed:" | |
| printf '%s\n' "${failed_checks[@]}" | |
| exit 1 | |
| fi | |
| echo "✅ All checks passed" | |
| pytest: | |
| name: Pytest | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: true | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| architecture: 'x64' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[dev]" | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest pytest-cov | |
| pytest tests/ -m "not regression" --cov=jaxley --cov-report=xml |