Skip to content
View jfy133's full-sized avatar
155 followers · 34 following

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@nf-core @SPAAM-community @sidora-tools @poseidon-framework

Block or report jfy133

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
jfy133/README.md

Hi there 👋, my name is James

I am a bioinformatician / research software engineer, specialising in Nextflow pipelines and (ancient) metagenomics

My GitHub Stats

🤖 I like pipelines, metadata, standards, documenting, and community projects!

🧬 My current research focus is currently on improving throughput and reproducibility of (ancient) metagenomic analysis, and developing standards for (meta)data archiving and reporting of ancient DNA sequencing data.

👪 I'm currently a core-team member of the nf-core initative of standardised Nextflow pipelines and I established the SPAAM-community of ancient metagenomics researchers and the MInAS intiative.

Skills

nextflowNEXTFLOW

r

bioconda

bash

git

linux


Research

orcid google-scholar


Contact

mastodon linked-in website


Current projects

See my pinned repositories

Mastodon

Pinned Loading

  1. nf-core/mag nf-core/mag Public

    Assembly and binning of metagenomes

    Nextflow 219 112

  2. nf-core/funcscan nf-core/funcscan Public

    (Meta-)genome screening for functional and natural product gene sequences

    Nextflow 75 21

  3. nf-core/taxprofiler nf-core/taxprofiler Public

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

    Nextflow 132 37

  4. nf-core/eager nf-core/eager Public

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

    Nextflow 154 82

  5. SPAAM-community/AncientMetagenomeDir SPAAM-community/AncientMetagenomeDir Public

    Repository containing lists of all published ancient metagenomic (and related) samples and libraries

    HTML 68 33

  6. MIxS-MInAS/MInAS MIxS-MInAS/MInAS Public

    Repository of proposed and combined MIxS + MInAS standardised metadata checklists using LinkML

    Python