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update to latest dcm2niix
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use heudiconv fork with unstacked dcm commit

This uses the latest heudiconv and cherry-picks the commit from AlanKuurstra:

support extended metadata from single unstacked dicom, dimension > 3
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akhanf committed Nov 20, 2024
1 parent 4f871d9 commit 4fc9830
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,11 @@ FROM debian:bullseye
LABEL maintainer="<[email protected]>"

# dcm2niix version
ENV DCM2NIIXTAG v1.0.20230411
ENV DCM2NIIXTAG v1.0.20240202

#heudiconv version:
ENV HEUDICONVTAG unstacked_dcm
ENV HEUDICONVOWNER akhanf
ENV HEUDICONVTAG v1.3.2+enhdicom.0

#bids validator version:
ENV BIDSTAG 1.9.7
Expand Down Expand Up @@ -44,7 +45,7 @@ RUN apt-get update -qq \
git \
python3-setuptools \
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \
&& git clone https://github.com/AlanKuurstra/heudiconv.git /src/heudiconv \
&& git clone https://github.com/${HEUDICONVOWNER}/heudiconv.git /src/heudiconv \
&& git -C /src/heudiconv checkout ${HEUDICONVTAG}
WORKDIR /src/heudiconv
RUN python3 -m pip install --no-cache-dir -r /src/heudiconv/requirements.txt \
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