Skip to content

Issues: kreshuklab/plant-seg

Need tests for core functionalities
#253 opened May 29, 2024 by qin-yu
Open
Complexity in prediction widget
#308 opened Sep 4, 2024 by qin-yu
Open 3
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

38 Open 165 Closed
38 Open 165 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Traceback error while opening an image
#375 opened Dec 22, 2024 by preet77-ai
Napari-related tests fail bug Something isn't working GUI Napari GUI related
#374 opened Dec 20, 2024 by qin-yu
Loading CZYX or ZCYX images into PlantSeg Napari causes multiple errors from widgets bug Something isn't working GUI Napari GUI related
#373 opened Dec 19, 2024 by qin-yu
Check for the keys again even if the chosen filename is the same
#372 opened Dec 16, 2024 by Buglakova
Translation from GUI settings to Python API not always completely clear question Further information is requested
#371 opened Dec 13, 2024 by oanegros
1
RuntimeError in 1.8.1: connected components: Need more labels than can be represented in the destination type. bug Something isn't working legacy Legacy GUI related
#342 opened Oct 1, 2024 by PauCasanova
5
Example config.yaml for current plant-seg version missing headless Headless mode related
#340 opened Oct 1, 2024 by Dampfnudeldroid
1
Need to use Enum in a better way enhancement New feature or request
#325 opened Sep 19, 2024 by qin-yu
Areas of GUI improvement before v2.0.0-alpha enhancement New feature or request GUI Napari GUI related
#324 opened Sep 19, 2024 by qin-yu
18 of 21 tasks
@qin-yu @lorenzocerrone
4
Use of Enum should be consistent enhancement New feature or request
#319 opened Sep 14, 2024 by qin-yu
Complexity in prediction widget BioImage.IO Related to BioImage.IO and AI4Life enhancement New feature or request GUI Napari GUI related
#308 opened Sep 4, 2024 by qin-yu
@qin-yu
3
2D Segmentation CNN Postprocessing Dimensions Error question Further information is requested
#301 opened Aug 30, 2024 by FliFlaFlock
3
No semantic type for probability maps
#295 opened Aug 20, 2024 by qin-yu
Should functionals take PlantSeg classes e.g. VoxelSize or tuple[float, float, float] bug Something isn't working enhancement New feature or request
#290 opened Aug 1, 2024 by qin-yu
1
Refactor Actions because docs build contains conda build enhancement New feature or request
#283 opened Jun 25, 2024 by qin-yu
Need more labels error from vigra during watershed in classic GUI bug Something isn't working legacy Legacy GUI related
#281 opened Jun 13, 2024 by athulrv
3
Watershed uses only one CPU and runs very slow on large volumes enhancement New feature or request
#270 opened Jun 4, 2024 by qin-yu
2
Model resolution should allow None to avoid a default like (1.0, 1.0, 1.0) bug Something isn't working
#254 opened May 29, 2024 by qin-yu
@qin-yu
2
Need tests for core functionalities enhancement New feature or request GUI Napari GUI related
#253 opened May 29, 2024 by qin-yu
1 task done
Need to make use of predictions from multiple models enhancement New feature or request GUI Napari GUI related
#225 opened Apr 25, 2024 by qin-yu
2 tasks
@qin-yu
Re-train all PlantSeg models to eliminate hallucination during inference BioImage.IO Related to BioImage.IO and AI4Life bug Something isn't working enhancement New feature or request
#224 opened Apr 17, 2024 by qin-yu
@qin-yu
Out of (host) memory at Data Pre-Processing step enhancement New feature or request question Further information is requested
#214 opened Mar 13, 2024 by bobonannan
3
Napari GUI: Parameter/config checking happens at widget runtime enhancement New feature or request GUI Napari GUI related
#209 opened Mar 6, 2024 by qin-yu
@qin-yu
2
It would be nice to know exactly which instances are removed by postprocessing steps enhancement New feature or request
#200 opened Feb 20, 2024 by qin-yu
Napari UI: Coordinate doesn't reflect real position bug Something isn't working GUI Napari GUI related
#199 opened Feb 19, 2024 by qin-yu
ProTip! What’s not been updated in a month: updated:<2024-11-28.