1.16_alpha1

Yass-1.16 : [march 2022 - ...]

• MoW (Minimally overlapping words) seeds strategy "sampling" added to speed up search on large sequences [march 2022]

1.15 alpha 9

Yass-1.15 : [january 2013 ...]

• ...
• Line number report [february 2018]
• Non-indexing errors have been replaced by warnings [july 2018]
• Correct penalty for negative overlap between two alignments [september 2018]
• Separating the "MAminscore" (evolving when too many alignemnts) and the "TUminscore" (to start an alignment) [september 2018]

1.15 alpha_8

Yass-1.15 : [january 2013 ...]

• ...
• Probability stats computed on forward/reverse strand [february 2017]
• Hotfix on regroup [july 2017]

1.15 alpha_7

Yass-1.15 : [january 2013 ...]

• ...
• Changing the behavior of -s 6x to avoid redudancy with -s 4x [august 2016]
  Now similar to -s 7x (BLAST), with the difference that the queries blocks
  are not kept in the same order as input, but ordered by their best overall score ...
• Solving some memory leak, uninitialized value, and a bug in "regroup.c": cleaning on customer but not on producer [december 2016]

1.15 alpha_6

Yass-1.15 : [january 2013 ...]

• Small improvement on first file (query) index on multifasta : avoid the "more than quadratic time" (due to reuse of kword first index)
  it is better than before, but no still perfect has it does not build index on multifasta file into a single index.
• dereferencing pointer compiler warning fixed
• bug on the index "imask" overflow fixed (not detected before : compiler issue ?)
• small bug on bad Entropy value (small difference) fixed (found by Aude Darrack), fixed in 1.15 [november 2014]
• not a bug: some warning added on the seed pattern when bad ones are in the input
• First hit (tuple) selection [Ongoing]
• Disabling the assemble_align thread at very first time, or for small sequences [august 2015]
• Fixing a regroup scoring evaluation (optimistic way with overlaps) + a regroup window increment
• Patching a Resolve_Overlap annoying Bug [april 2016]
• Patching a Lazy Alignment large indel Bug + some valgrind [may 2016]