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1. genesis genesis Public

   A library for working with phylogenetic and population genetic data.

   C++ 58 12

2. gappa gappa Public

   A toolkit for analyzing and visualizing phylogenetic (placement) data

   C++ 57 7

3. grenedalf grenedalf Public

   Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

   C++ 35 3

4. moiexpositoalonsolab/grenepipe moiexpositoalonsolab/grenepipe Public

   A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

   Python 95 21

5. torognes/swarm torognes/swarm Public

   A robust and fast clustering method for amplicon-based studies

   C++ 127 23

6. petrov-lab/HAFpipe-line petrov-lab/HAFpipe-line Public

   calculate haplotype-derived allele frequencies for pool-seq samples

   Shell 7 1