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"differential variants" -> "internal variants"
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Brian Ondov committed Sep 30, 2016
1 parent fc59381 commit 7e8f420
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4 changes: 2 additions & 2 deletions html/index.html
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Expand Up @@ -15,8 +15,8 @@ <h2 id="main">Main window (<a href="#">back to Contents</a>)</h2>
<li><strong>Phylogenetic tree - </strong>Use the scroll wheel or click to zoom in on particular clades. To zoom out, use the scroll wheel or click wherever the cursor is an up-arrow (outside zoomable clades). Click on a leaf to enlarge the surrounding leaves, and click again to shrink. Right-click to:
<ul>
<li>Set a clade or leaf as the out-group</li>
<li>Export differential variants for a clade (VCF containing only positions that vary among clade members)<li>
<li>Export signature variants for a clade (VCF containing only positions that are consistent among clade members but different outside of the clade)<li>
<li>Export internal variants for a clade (VCF containing only positions that vary among clade members, and columns only for clade members)<li
<li>Export signature variants for a clade (VCF containing only positions that are consistent among clade members but different outside of the clade; all columns will still be included)<li>
</ul>
</li><br/>
<li><strong>SNP heatmap - </strong>Shows SNP density across each genome, scaled by the maximum density at the current zoom. Zoom in with the scroll wheel to see more detail or alignments. Click a track to enlarge the surrounding tracks, and click again to shrink. Right-click to set a track as the variant reference.</li><br/>
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2 changes: 1 addition & 1 deletion src/PhylogenyTreeViewMain.cpp
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Expand Up @@ -175,7 +175,7 @@ void PhylogenyTreeViewMain::mousePressEvent(QMouseEvent * event)

if ( highlightNode->getChildrenCount() > 0 )
{
QAction * actionDiff = new QAction(tr("Export differential variants as VCF"), this);
QAction * actionDiff = new QAction(tr("Export internal variants as VCF"), this);
connect(actionDiff, SIGNAL(triggered()), this, SLOT(exportDifferential()));
menuContext->addAction(actionDiff);

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