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matt-sd-watson/README.md

Hi there πŸ‘‹

I am a programmer/software developer with the LTRI at Mount Sinai (Toronto, Canada) working jointly with the Campbell and Jackson groups with experience in:

🐍 programming and software development
πŸ“Œ Data science/analysis
πŸ“· high dimensional multiplexed imaging
β™‹ cancer genomics
πŸ› public health pathogen analysis
πŸ’» single cell multi-omics


πŸ”¬ programming, development, coding, statistics, CI/CD
πŸŽ“ MSc. in Data Science, University of Texas at Austin
⏰ Off the clock: I can be found in a πŸ›Ά or seeking a new international adventure ✈️. Almost always looking for a good 🍺.




GitHub Streak


Check out some of my software packages!

🐟 rakaia
πŸ„ spora
πŸ”€ nf-processes
πŸ“Š cytomarker


Public projects that I have contributed to!

πŸ¦” pangolin
🌲 ggtree
πŸ”Ž civet/civet3
⚑ snipit
πŸ“Ά infercnv
🐐 steinbock

Pinned Loading

  1. YuLab-SMU/ggtree YuLab-SMU/ggtree Public

    πŸŽ„Visualization and annotation of phylogenetic trees

    R 850 173

  2. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 430 106

  3. spora spora Public

    πŸ„ spora: Streamlined Phylogenomic Outbreak Report Analysis

    Python 4

  4. FASTAfurious FASTAfurious Public

    🏎️ Bundled utilities for manipulation and integration of FASTA files

    Python 4

  5. broadinstitute/infercnv broadinstitute/infercnv Public

    Inferring CNV from Single-Cell RNA-Seq

    R 581 166

  6. camlab-bioml/cytomarker camlab-bioml/cytomarker Public

    Interactive design and validation of antibody panels using single-cell atlases

    R 2