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Merge branch 'master' into r/revdepcheck #17

Merge branch 'master' into r/revdepcheck

Merge branch 'master' into r/revdepcheck #17

name: R reverse dependency checks
on:
push:
# Run manually by clicking a button in the UI
workflow_dispatch:
# Run on the 5th day of every month
schedule:
- cron: '0 0 5 * *'
# automatically cancel in-progress builds if another commit is pushed
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
env:
# parallelize compilation (extra important for Linux, where CRAN doesn't supply pre-compiled binaries)
MAKEFLAGS: "-j4"
# ignore R CMD CHECK NOTE checking how long it has
# been since the last submission
_R_CHECK_CRAN_INCOMING_REMOTE_: 0
# CRAN ignores the "installed size is too large" NOTE,
# so our CI can too. Setting to a large value here just
# to catch extreme problems
_R_CHECK_PKG_SIZES_THRESHOLD_: 100
# ensure that the locally-installed version of 'tidy' is used
# ref: https://cran.r-project.org/doc/manuals/R-exts.html#Checking-packages
R_TIDYCMD: '/usr/local/bin/tidy'
jobs:
test:
name: r-revdepchecks (${{ matrix.os }})
runs-on: ${{ matrix.os }}
timeout-minutes: 60
strategy:
fail-fast: false
# NOTE: platforms that CRAN provides pre-compiled binaries on (like macOS and Windows)
# are preferable for this, because packages installs are much faster
matrix:
os:
- macos-14
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 5
submodules: true
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: 'release'
- name: install system dependencies
run: |
brew install \
automake \
basictex \
checkbashisms \
libomp \
qpdf
echo "/Library/TeX/texbin/" >> ${GITHUB_PATH}
sudo /Library/TeX/texbin/tlmgr --verify-repo=none update --self
sudo /Library/TeX/texbin/tlmgr --verify-repo=none install inconsolata helvetic rsfs
- name: install tidy
run: |
# install tidy v5.8.0
# ref: https://groups.google.com/g/r-sig-mac/c/7u_ivEj4zhM
TIDY_URL=https://github.com/htacg/tidy-html5/releases/download/5.8.0/tidy-5.8.0-macos-x86_64+arm64.pkg
curl -sL ${TIDY_URL} -o tidy.pkg
sudo installer \
-pkg "$(pwd)/tidy.pkg" \
-target /
- name: build package
run: |
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores(), type = 'binary')"
sh ./build-cran-package.sh
- name: pre-install binary packages
# pre-install all of the dependencies... tools::check_packages_in_dir()
# is hard-coded to compile them all from source, which takes a long time
# (https://github.com/wch/r-source/blob/594b842678e932088b16ec0cd3c39714a141eed9/src/library/tools/R/checktools.R#L295)
run: |
Rscript -e "install.packages('crandep', repos='https://cran.r-project.org', Ncpus = parallel::detectCores())"
Rscript ./.ci/download-r-revdeps.R
- name: run revdepchecks
run: |
bash ./.ci/run-revdep-checks.sh
all-r-revdepchecks-jobs-successful:
if: always()
runs-on: ubuntu-latest
needs: [test]
steps:
- name: Note that all tests succeeded
uses: re-actors/[email protected]
with:
jobs: ${{ toJSON(needs) }}