Merge pull request #10 from mirpedrol/safe-fixes

Safe fixes

CHANGELOG.md

@@ -7,4 +7,5 @@
 - Add command `nf-class subworkflows expand-class` [#2](https://github.com/mirpedrol/nf-class/pull/2)
 - Add pytests [#5](https://github.com/mirpedrol/nf-class/pull/5)
 - Handle composed modules when expanding a subworkflow [#6](https://github.com/mirpedrol/nf-class/pull/6)
-- Modify expand-class command to avoid conditional includes [#8](https://github.com/mirpedrol/nf-class/pull/8)
+- Modify `expand-class` command to avoid conditional includes [#8](https://github.com/mirpedrol/nf-class/pull/8)
+- Don't allow expanding a subworkflow in a pipelines repo & pin nf-core version [#10](https://github.com/mirpedrol/nf-class/pull/10)

nf_class/subworkflows/create.py

@@ -71,6 +71,9 @@ def __init__(
 
     def expand_class(self):
         """Expand the subworkflow with modules from a class."""
+        if self.repo_type == "pipelines":
+            raise UserWarning("Expanding a subworkflow from a class is not supported for pipelines.")
+
         if self.directory != ".":
             log.info(f"Base directory: '{self.directory}'")
 

requirements.txt

@@ -1 +1 @@
-nf-core
+nf-core==3.0.*