Merge pull request #421 from mlr-org/remove_survregr

Remove survregr
mlr-org · Oct 25, 2024 · de18eb5 · de18eb5
2 parents 44fd50c + 29ee6ee
commit de18eb5
Show file tree

Hide file tree

Showing 31 changed files with 22 additions and 2,259 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: mlr3proba
 Title: Probabilistic Supervised Learning for 'mlr3'
-Version: 0.7.0
+Version: 0.7.1
 Authors@R:
     c(person(given = "Raphael",
              family = "Sonabend",
@@ -140,18 +140,11 @@ Collate:
     'PipeOpDistrCompositor.R'
     'PipeOpPredClassifSurvDiscTime.R'
     'PipeOpPredClassifSurvIPCW.R'
-    'PipeOpTransformer.R'
-    'PipeOpPredTransformer.R'
-    'PipeOpPredRegrSurv.R'
-    'PipeOpPredSurvRegr.R'
     'PipeOpProbregrCompositor.R'
     'PipeOpResponseCompositor.R'
     'PipeOpSurvAvg.R'
-    'PipeOpTaskRegrSurv.R'
     'PipeOpTaskSurvClassifDiscTime.R'
     'PipeOpTaskSurvClassifIPCW.R'
-    'PipeOpTaskSurvRegr.R'
-    'PipeOpTaskTransformer.R'
     'PredictionDataDens.R'
     'PredictionDataSurv.R'
     'PredictionDens.R'

diff --git a/NAMESPACE b/NAMESPACE
@@ -72,18 +72,11 @@ export(PipeOpCrankCompositor)
 export(PipeOpDistrCompositor)
 export(PipeOpPredClassifSurvDiscTime)
 export(PipeOpPredClassifSurvIPCW)
-export(PipeOpPredRegrSurv)
-export(PipeOpPredSurvRegr)
-export(PipeOpPredTransformer)
 export(PipeOpProbregr)
 export(PipeOpResponseCompositor)
 export(PipeOpSurvAvg)
-export(PipeOpTaskRegrSurv)
 export(PipeOpTaskSurvClassifDiscTime)
 export(PipeOpTaskSurvClassifIPCW)
-export(PipeOpTaskSurvRegr)
-export(PipeOpTaskTransformer)
-export(PipeOpTransformer)
 export(PredictionDens)
 export(PredictionSurv)
 export(TaskDens)
@@ -102,7 +95,6 @@ export(get_mortality)
 export(pecs)
 export(pipeline_survtoclassif_IPCW)
 export(pipeline_survtoclassif_disctime)
-export(pipeline_survtoregr)
 export(plot_probregr)
 import(checkmate)
 import(data.table)

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# mlr3proba 0.7.1
+
+* Removed all `PipeOp`s and pipelines related to survival => regression reduction techniques (see #414)
+
 # mlr3proba 0.7.0
 
 * Add `mlr3pipelines` to `Imports` and set minimum latest version from CRAN (`0.7.0`)

diff --git a/R/PipeOpPredClassifSurvDiscTime.R b/R/PipeOpPredClassifSurvDiscTime.R
@@ -34,7 +34,7 @@
 #'
 #' @references
 #' `r format_bib("tutz_2016")`
-#' @family PipeOps
+#' @seealso [pipeline_survtoclassif_disctime]
 #' @family Transformation PipeOps
 #' @export
 PipeOpPredClassifSurvDiscTime = R6Class("PipeOpPredClassifSurvDiscTime",

diff --git a/R/PipeOpPredClassifSurvIPCW.R b/R/PipeOpPredClassifSurvIPCW.R
@@ -36,7 +36,7 @@
 #' @references
 #' `r format_bib("vock_2016")`
 #'
-#' @family PipeOps
+#' @seealso [pipeline_survtoclassif_IPCW]
 #' @family Transformation PipeOps
 #' @export
 PipeOpPredClassifSurvIPCW = R6Class("PipeOpPredClassifSurvIPCW",

diff --git a/R/PipeOpPredRegrSurv.R b/R/PipeOpPredRegrSurv.R
diff --git a/R/PipeOpPredSurvRegr.R b/R/PipeOpPredSurvRegr.R
diff --git a/R/PipeOpPredTransformer.R b/R/PipeOpPredTransformer.R
diff --git a/R/PipeOpSurvAvg.R b/R/PipeOpSurvAvg.R
@@ -30,6 +30,7 @@
 #' Inherits from [PipeOpEnsemble][mlr3pipelines::PipeOpEnsemble] by implementing the
 #' `private$weighted_avg_predictions()` method.
 #'
+#' @seealso [pipeline_survaverager]
 #' @family PipeOps
 #' @family Ensembles
 #' @export

diff --git a/R/PipeOpTaskRegrSurv.R b/R/PipeOpTaskRegrSurv.R