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new cluster test API #12663

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new cluster test API #12663

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62daaf0
added cluster test api, first commit
CarinaFo Jun 14, 2024
d59978f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 14, 2024
2843905
tested dataframe function and results, cleaned up
CarinaFo Jun 14, 2024
1985da3
Merge branch 'new_cluster_stats_api_GSOC24' of https://github.com/Car…
CarinaFo Jun 14, 2024
fa5b215
added ToDos
CarinaFo Jun 14, 2024
1a1511d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 14, 2024
0ea220c
Merge branch 'new_cluster_stats_api_GSOC24' of https://github.com/Car…
CarinaFo Jun 14, 2024
a12cf95
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 14, 2024
3c5d4f1
Merge branch 'mne-tools:main' into new_cluster_stats_api_GSOC24
CarinaFo Jun 19, 2024
45ce63a
added formula support and implemented suggestions
CarinaFo Jun 19, 2024
2b7bae8
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 19, 2024
38834ba
fixed linting errors
CarinaFo Jun 22, 2024
c00859f
ENH: Add dataset [skip azp] [skip actions]
larsoner Jun 25, 2024
9c8ec90
FIX: One more [skip azp] [skip actions]
larsoner Jun 25, 2024
47363b5
FIX: Title [skip azp] [skip actions]
larsoner Jun 25, 2024
1f6221d
first draft of formulaic paired t-test
CarinaFo Jun 30, 2024
37616e5
first draft without cluster plotting class implemented
CarinaFo Jul 6, 2024
6aaef9a
cleaned up plotting function
CarinaFo Jul 6, 2024
0f99c70
implemented cluser results class
CarinaFo Jul 6, 2024
4083691
added contribution
CarinaFo Jul 6, 2024
42d70f9
Merge branch 'mne-tools:main' into new_cluster_stats_api_GSOC24
CarinaFo Jul 18, 2024
8a57215
Merge branch 'new_cluster_stats_api_GSOC24' of https://github.com/Car…
CarinaFo Jul 18, 2024
7e9b2e5
fixed codespell
CarinaFo Jul 18, 2024
12f27dd
Merge branch 'main' into new_cluster_stats_api_GSOC24
CarinaFo Jul 19, 2024
8f510a9
first review
CarinaFo Jul 22, 2024
d6c0c4c
quick clean up
CarinaFo Jul 22, 2024
f17f38f
test compare_old_vs_new_cluster_API
CarinaFo Jul 22, 2024
9d592de
simplify tests
drammock Jul 25, 2024
d64ef84
refactor cluster_test
drammock Jul 25, 2024
dc8a799
make tutorial match modified API
drammock Jul 25, 2024
f12cf6e
remove unused test helper func
drammock Jul 25, 2024
5b97971
vulture allowlist update
drammock Jul 25, 2024
5f5b0fc
included BaseTFR in validate_cluster_df
CarinaFo Jul 28, 2024
ccccb5b
comments on cluster_test function
CarinaFo Jul 28, 2024
59b1a3a
updated clusterResult class and plot function
CarinaFo Jul 28, 2024
98d0879
updated function call for plotting
CarinaFo Jul 28, 2024
ec03242
changed color
CarinaFo Jul 28, 2024
a513518
Merge branch 'main' into new_cluster_stats_api_GSOC24
CarinaFo Jul 31, 2024
1a5dd9d
Merge branch 'new_cluster_stats_api_GSOC24' of https://github.com/Car…
CarinaFo Jul 31, 2024
5941f61
docstring/docdict cleanups and fixes
drammock Aug 1, 2024
368fa44
implemented Dan's comments
CarinaFo Aug 5, 2024
3aa32b6
implemented Dan's comments
CarinaFo Aug 5, 2024
a76afd3
test for handling different MNE objects - test is failing
CarinaFo Aug 5, 2024
b5fce8b
adjusted test to account for multiple subjects
CarinaFo Aug 6, 2024
3ce510c
refactor df validation to return bools
drammock Aug 10, 2024
feb1911
unrelated typing fix
drammock Aug 10, 2024
6f97811
rework test
drammock Aug 10, 2024
b09d20a
minor cleanup
drammock Aug 12, 2024
977e153
fix imports
drammock Aug 12, 2024
a288d85
use MRO in test too
drammock Aug 12, 2024
81ce0d0
Merge pull request #5 from drammock/new_cluster_stats_api_GSOC24
CarinaFo Aug 21, 2024
05586c8
added cluster test api, first commit
CarinaFo Jun 14, 2024
e8770fd
tested dataframe function and results, cleaned up
CarinaFo Jun 14, 2024
a081d7d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 14, 2024
d6d70c8
added ToDos
CarinaFo Jun 14, 2024
8345261
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 14, 2024
0373195
added formula support and implemented suggestions
CarinaFo Jun 19, 2024
8bc44f9
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 19, 2024
654a350
fixed linting errors
CarinaFo Jun 22, 2024
d1ed8a1
ENH: Add dataset [skip azp] [skip actions]
larsoner Jun 25, 2024
c634a44
FIX: One more [skip azp] [skip actions]
larsoner Jun 25, 2024
0c2eb4f
FIX: Title [skip azp] [skip actions]
larsoner Jun 25, 2024
f46a79c
first draft of formulaic paired t-test
CarinaFo Jun 30, 2024
5d1cbae
first draft without cluster plotting class implemented
CarinaFo Jul 6, 2024
268d0cf
cleaned up plotting function
CarinaFo Jul 6, 2024
2f722bd
implemented cluser results class
CarinaFo Jul 6, 2024
fb75cfd
fixed codespell
CarinaFo Jul 18, 2024
a87ffed
first review
CarinaFo Jul 22, 2024
1f857ad
quick clean up
CarinaFo Jul 22, 2024
450738b
test compare_old_vs_new_cluster_API
CarinaFo Jul 22, 2024
d41efbe
simplify tests
drammock Jul 25, 2024
9523fae
refactor cluster_test
drammock Jul 25, 2024
9661492
make tutorial match modified API
drammock Jul 25, 2024
cac0559
remove unused test helper func
drammock Jul 25, 2024
47ac838
vulture allowlist update
drammock Jul 25, 2024
033c158
included BaseTFR in validate_cluster_df
CarinaFo Jul 28, 2024
2c2f341
comments on cluster_test function
CarinaFo Jul 28, 2024
e9b5fa2
updated clusterResult class and plot function
CarinaFo Jul 28, 2024
2fd17d3
updated function call for plotting
CarinaFo Jul 28, 2024
150c530
changed color
CarinaFo Jul 28, 2024
3cc9e2c
docstring/docdict cleanups and fixes
drammock Aug 1, 2024
2c27a69
implemented Dan's comments
CarinaFo Aug 5, 2024
2664ee2
implemented Dan's comments
CarinaFo Aug 5, 2024
4927544
test for handling different MNE objects - test is failing
CarinaFo Aug 5, 2024
006acdf
adjusted test to account for multiple subjects
CarinaFo Aug 6, 2024
f0f4cba
refactor df validation to return bools
drammock Aug 10, 2024
346e3ce
unrelated typing fix
drammock Aug 10, 2024
a49d2cd
rework test
drammock Aug 10, 2024
a01182b
minor cleanup
drammock Aug 12, 2024
0984b61
fix imports
drammock Aug 12, 2024
6322499
use MRO in test too
drammock Aug 12, 2024
a04b8a3
fix vulture allowlist
drammock Aug 22, 2024
f1d39bf
fix nesting and type hints
drammock Aug 22, 2024
987ea43
strict=False
drammock Aug 22, 2024
78829b4
nest import in test file too
drammock Aug 22, 2024
eb98849
Merge branch 'new_cluster_stats_api_GSOC24' of https://github.com/Car…
CarinaFo Aug 23, 2024
ac943e3
Merge branch 'main' into new_cluster_stats_api_GSOC24
CarinaFo Sep 17, 2024
372bcca
clean up pyproject mess
CarinaFo Oct 2, 2024
4da8463
add n_permutations, plotting, added min_cluster_p_value
CarinaFo Oct 2, 2024
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