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Update the GARD subset in Mondo #6992

Merged
merged 3 commits into from
Dec 8, 2023
Merged

Update the GARD subset in Mondo #6992

merged 3 commits into from
Dec 8, 2023

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matentzn
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@matentzn matentzn commented Dec 8, 2023

This PR updates the GARD subset in Mondo. In particular it:

  1. Adds gard_rare subset declaration
  2. XREFs to GARD terms (with the ORDO/OMIM terms they were sourced from)

@matentzn matentzn requested a review from sabrinatoro as a code owner December 8, 2023 14:45
@sabrinatoro sabrinatoro self-assigned this Dec 8, 2023
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@matentzn Can you please confirm that all I am expecting is the update to the Mondo-edit file? Thanks.

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matentzn commented Dec 8, 2023

@matentzn Can you please confirm that all I am expecting is the update to the Mondo-edit file? Thanks.

Yes I have the pipelines in a different PR #6903

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@matentzn The GARD cross-references are duplicated (one has a "in mondo-subsets"). I don't think it is expected. (see image)
Also, please confirm that these are only x-refs (and therefore doesn't need "Mondo: equivalentTo")
Uploading Screenshot 2023-12-08 at 08.53.11.png…

@sabrinatoro sabrinatoro assigned matentzn and unassigned sabrinatoro Dec 8, 2023
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twhetzel commented Dec 8, 2023

The gard_rare subset declaration is in duplicate on many if not all terms where it is added.

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Screenshot 2023-12-08 at 08 53 11
(hopefully the screenshot works this time)

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matentzn commented Dec 8, 2023

I should have deleted the import.. Now I have to wait again for the QC to pass :D

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It looks good to me, @matentzn
I will merge once QC have passed.

@matentzn matentzn merged commit ca62b5d into master Dec 8, 2023
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@matentzn matentzn deleted the update-gard branch December 8, 2023 18:25
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3 participants