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v0.0.7 (February 26, 2015)

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@mwaskom mwaskom released this 26 Feb 19:10
· 556 commits to master since this release

Execution

  • Added the option to submit jobs using slurm.
  • Added the crash_dir parameter at the project level (i.e. it will
    be defined when you run setup_project.py and will be stored in
    $LYMAN_DIR/project.py). This allows you to specify where
    debugging information will be written if something goes wrong during
    workflow execution. The previous approach to selecting where crash
    files would be written was not robust in all execution contexts.
    Important: if you upgrade to this version and try to rerun
    something in an existing project, you will get an error. This can be
    avoided by defining crash_dir in your project file. These files
    are usually only transiently useful, so the default location for new
    projects is /tmp/nipype-$USER-crashes.

Registration workflow

  • Added ability to register the residual timeseries after
    model-fitting, using the -residual flag in run_fmri.py when
    reg is in the workflow spec. This file will be called
    res4d_xfm.nii.gz in the registration output.