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Added the ability to supply fieldmap images that can be used to
unwarp distortions caused by susceptibility regions. This uses FSL's topup and applytopup utilities. The images you should provide
aren't actually traditional "fieldmaps", but rather images with
normal and reversed phase encoding directions, from which a map of
the distortions can be computed. See the new experiment option fieldmap_template.
Model workflow
Added the ability to include additional nuisance variables in the
model. This can now include eigenvariates of deep white matter
timeseries and the mean signal from across the whole brain. This
involves the new experiment options wm_components and confound_sources. This change requires that you rerun the preproc
workflow before running the model workflow after updating lyman.
Made the inclusion of artifact indicator vectors in the design
matrix optional. See the new experiment option remove_artifacts.
Made some changes to the model summary node to use memory more
efficiently. The model summary code should now use a similar amount
of memory as the film_gls model fitting process.
Fixed effects workflow
Fixed effects workflow now saves out a mean functional image that is
the grand mean across runs.