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v0.0.9 (December 11, 2015)

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@mwaskom mwaskom released this 11 Dec 20:55
· 491 commits to master since this release

Preproc workflow

  • Added the ability to supply fieldmap images that can be used to
    unwarp distortions caused by susceptibility regions. This uses FSL's
    topup and applytopup utilities. The images you should provide
    aren't actually traditional "fieldmaps", but rather images with
    normal and reversed phase encoding directions, from which a map of
    the distortions can be computed. See the new experiment option
    fieldmap_template.

Model workflow

  • Added the ability to include additional nuisance variables in the
    model. This can now include eigenvariates of deep white matter
    timeseries and the mean signal from across the whole brain. This
    involves the new experiment options wm_components and
    confound_sources. This change requires that you rerun the preproc
    workflow before running the model workflow after updating lyman.
  • Made the inclusion of artifact indicator vectors in the design
    matrix optional. See the new experiment option remove_artifacts.
  • Made some changes to the model summary node to use memory more
    efficiently. The model summary code should now use a similar amount
    of memory as the film_gls model fitting process.

Fixed effects workflow

  • Fixed effects workflow now saves out a mean functional image that is
    the grand mean across runs.