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fixed typo in usage
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najoshi committed Jul 18, 2014
1 parent c72e25d commit a531f4e
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/trim_paired.c
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@ void paired_usage(int status) {
PROGRAM_NAME);
fprintf(stderr, "\nIf you have one file with interleaved forward and reverse reads...\n");
fprintf(stderr, "\nUsage: %s pe -c <combined input file> -t <quality type> -m <combined trimmed output> -s <trimmed singles file>\n", PROGRAM_NAME);
fprintf(stderr, "\n Options:\n\
fprintf(stderr, "\nOptions:\n\
-t, --qual-type, Type of quality values (solexa (CASAVA < 1.3), illumina (CASAVA 1.3 to 1.7), sanger (which is CASAVA >= 1.8)) (required)\n\
-f, --pe-file1, Input paired-end fastq file 1 (optional, must have same number of records as pe2)\n\
-r, --pe-file2, Input paired-end fastq file 2 (optional, must have same number of records as pe1)\n\
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