v16.18.0

Genome assembly data report

• Features: Added new field names to BioSample section of the assembly data report.

Command line tool

• Bug Fixes: Expose dataformat template flags for taxonomy subcommand.

Documentation

• Bug Fixes: Additional fixes to broken examples on the REST API docs.

API

• Features: Support assembly queries by WGS accession.

v16.17.3

Services

• Bug Fixes: Fixed bug affecting virus downloads.

v16.17.2

Command-line tool

• Update CLI error message for BioProject requests without assembled genomes

Documentation

• Add SRA data retrieval FAQ

v16.17.1

CLI

• Bug Fixes: Fix issue where client can crash when using special characters in a taxonomy name

v16.17.0

CLI

• Features: Search children and parents in taxonomy CLI when --rank flag is specified

Documentation

• Features: Create new how-to with instructions to retrieve metadata for influenza

Services

• Features: Enable sorting for new genome table columns

v16.16.0

Command-line tool

• Fixed bad output when using the --debug flag.
• Added new --exclude-multi-isolate flag to the genome CLI commands. See definition.
• Added a taxonomy --rank flag to taxonomy CLI commands.
• Updated CLI warning for users of the v1 API.
• Added sunset headers for all v1 and v1alpha requests.

Documentation

• Updated GitHub README to add V1 retirement warning
• Added How-to page for retrieving Alphainfluenza genomes.
• Fix broken responses in API documentation examples.

Features

• Make GBFF file available for download for all genomes, when available.

v16.15.0

CLI

• Features: Add --from-type flag to CLI to only return genomes from type material

v16.14.0

Command-line tool

• Fixed a bug with the dataformat --package flag.

Documentation

• Added documentation page for genome quality analysis methods for BUSCO, CheckM, and Foreign Contamination Screening.

Features

• Add rank filter to datasets taxonomy taxon, data_report, and name_report API endpoints.

v16.13.0

Documentation

• Updated the warning banner on the v1 documentation pages to include a link to the command line download and install page.
• Updated the Genome Notes page to include additional categories.
• Updated the Glossary page.
• Updated the Genome selected for RefSeq Annotation page to include information on prokaryotic and viral genomes.

Features

• Added a new field for sequence name (sequenceName) to the sequence data report

v16.12.1

DOCS

• Release new NCBI Assembly Data Model documentation page

Bugs

• Fixed a bug with taxonomy summary and data package requests for child nodes.