Removed excess code from test_stxtyper.sh

test_stxtyper.sh

@@ -46,31 +46,6 @@ function test_input_file {
     fi
 }
 
-function test_amrfinder_output {
-    local test_base=$1
-    if ! $STXTYPER --amrfinder -n "test/$test_base.fa" > "test/$test_base.amr.got"
-    then
-        echo "not ok: $STXTYPER returned a non-zero exit value indicating a failure of the software"
-        echo "#  $STXTYPER -n test/$test_base.fa > test/$test_base.amr.got"
-        return 1
-    else
-        if ! diff -q "test/$test_base.amr.expected" "test/$test_base.amr.got"
-            ###### STOPPED HERE ######
-        then
-            echo "not ok: $STXTYPER returned output different from expected"
-            echo "#  $STXTYPER -n test/$test_base.fa > test/$test_base.got"
-            echo "# diff test/$test_base.expected test/$test_base.got"
-            diff "test/$test_base.expected" "test/$test_base.got"
-            echo "#  To approve run:"
-            echo "#     mv test/$test_base.got test/$test_base.expected "
-            return 1
-        else
-            echo "ok: test/$test_base.fa"
-            return 0
-        fi
-    fi
-}
-
 
 test_input_file 'basic'
 FAILURES=$(( $? + $FAILURES ))