Support Python 3.12 and test in CI #3030

Job	Run time
mypy	45s
pathogen-repo-ci (dengue)	4m 16s
pyright	27s
pathogen-repo-ci (lassa)	2m 18s
check-docs	38s
pathogen-repo-ci (measles)	2m 57s
pathogen-repo-ci (mpox)	2m 52s
pathogen-repo-ci (seasonal-cov)	3m 21s
test (python=3.8 biopython=1.80)	12m 6s
pathogen-repo-ci (zika)	3m 25s
pathogen-repo-ci-v0 (avian-flu)	2m 36s
test (python=3.8 biopython=1.82)	11m 58s
pathogen-repo-ci-v0 (ebola)	2m 39s
test (python=3.8 biopython=latest)	12m 28s
pathogen-repo-ci-v0 (mumps)	2m 27s
test (python=3.9 biopython=1.80)	13m 1s
pathogen-repo-ci-v0 (ncov)	3m 9s
pathogen-repo-ci-v0 (rsv)	9m 58s
test (python=3.9 biopython=1.82)	12m 58s
pathogen-repo-ci-v0 (seasonal-flu)	2m 55s
test (python=3.9 biopython=latest)	12m 59s
pathogen-repo-ci-v0 (tb)	2m 54s
test (python=3.10 biopython=1.80)	12m 36s
test (python=3.10 biopython=1.82)	13m 38s
test (python=3.10 biopython=latest)	13m 2s
test (python=3.11 biopython=1.80)	12m 44s
test (python=3.11 biopython=1.82)	13m 4s
test (python=3.11 biopython=latest)	12m 34s
test (python=3.12 biopython=1.82)	19m 36s
test (python=3.12 biopython=latest)	19m 33s
build-docs / build	2m 25s
codecov	21s
release	0s
rebuild-docker-image	0s
	4h 2m 40s

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