CI #3128
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
47s
pyright
14s
build-docs
/
build
2m 25s
check-docs
36s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
28 errors and 41 warnings
|
test (python=3.11 biopython=1.82)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.11 biopython=1.82)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
|
|
test (python=3.9 biopython=1.80)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.9 biopython=1.80)
The operation was canceled.
|
|
test (python=3.11 biopython=1.80)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.11 biopython=1.80)
The operation was canceled.
|
|
test (python=3.11 biopython=1.80)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.10 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.10 biopython=latest)
The operation was canceled.
|
|
test (python=3.10 biopython=latest)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.10 biopython=1.82)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.10 biopython=1.82)
The operation was canceled.
|
|
test (python=3.10 biopython=1.82)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.12 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.12 biopython=latest)
The operation was canceled.
|
|
test (python=3.12 biopython=latest)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.9 biopython=1.82)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.9 biopython=1.82)
The operation was canceled.
|
|
test (python=3.9 biopython=1.82)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.11 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.11 biopython=latest)
The operation was canceled.
|
|
test (python=3.11 biopython=latest)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
|
|
test (python=3.10 biopython=1.80)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.10 biopython=1.80)
The operation was canceled.
|
|
test (python=3.12 biopython=1.82)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.12 biopython=1.82)
The operation was canceled.
|
|
test (python=3.9 biopython=latest)
The job was canceled because "_3_11_1_82" failed.
|
|
test (python=3.9 biopython=latest)
The operation was canceled.
|
|
pyright
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
test (python=3.11 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
check-docs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
mypy
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
pathogen-repo-ci-v0 (avian-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci-v0 (mumps)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (mumps)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci-v0 (ebola)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (ebola)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (wnv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci-v0 (ncov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (zika)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (mpox)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci-v0 (tb)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci-v0 (seasonal-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (measles)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (oropouche)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
build-docs / build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (seasonal-cov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (dengue)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (rabies)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (yellow-fever)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci (lassa)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
|
pathogen-repo-ci-v0 (rsv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/master, Key: 2024-12-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
|
Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
|
output-avian-flu
|
96.6 KB |
|
|
output-dengue
|
1.31 MB |
|
|
output-ebola
|
111 KB |
|
|
output-lassa
|
1.41 MB |
|
|
output-measles
|
3.85 MB |
|
|
output-mpox
|
12.8 MB |
|
|
output-mumps
|
339 KB |
|
|
output-ncov
|
710 KB |
|
|
output-oropouche
|
501 KB |
|
|
output-rabies
|
4.89 MB |
|
|
output-rsv
|
9.45 MB |
|
|
output-seasonal-cov
|
1.62 MB |
|
|
output-seasonal-flu
|
53.8 KB |
|
|
output-tb
|
5.02 MB |
|
|
output-wnv
|
178 KB |
|
|
output-yellow-fever
|
2.1 MB |
|
|
output-zika
|
745 KB |
|