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[augur ancestral] arg parsing improvements #1847

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[augur ancestral] arg parsing improvements

[augur ancestral] arg parsing improvements #1847

Run time

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Job Run time
test (python=3.8 biopython=1.76)
6m 54s
pathogen-repo-ci (avian-flu)
41s
test (python=3.8 biopython=1.79)
6m 50s
pathogen-repo-ci (ebola)
53s
test (python=3.8 biopython=1.80)
6m 42s
pathogen-repo-ci (lassa)
58s
test (python=3.8 biopython=latest)
6m 45s
pathogen-repo-ci (mumps)
1m 7s
test (python=3.9 biopython=1.79)
6m 51s
pathogen-repo-ci (ncov)
1m 2s
build-docs / build-pip
52s
test (python=3.9 biopython=1.80)
6m 43s
pathogen-repo-ci (rsv)
2m 24s
test (python=3.9 biopython=latest)
6m 54s
pathogen-repo-ci (seasonal-flu)
1m 26s
test (python=3.10 biopython=1.80)
6m 46s
pathogen-repo-ci (tb)
1m 27s
build-docs / build-conda
0s
pathogen-repo-ci (zika)
47s
test (python=3.10 biopython=latest)
6m 47s
test (python=3.11 biopython=1.80)
6m 50s
test (python=3.11 biopython=latest)
7m 14s
codecov
16s
1h 27m 9s