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Provide GNU awk, grep, sed, and tar in the runtime #94

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Oct 10, 2024
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@tsibley tsibley commented Oct 9, 2024

They're provided in our other runtimes (almost by happenstance, as part of the underlying OS image) and having them available in all runtimes makes it much easier to write portable programs without having to deal with GNU vs. BSD differences.

Note that typically these GNU programs would already be available in the Conda runtime on Linux (via the host system), but not the Conda runtime on macOS (unless installed separately, e.g. via Homebrew). So explicitly including the GNU-flavored programs here increases consistency, isolation, and portability of the runtime.

These were ostensibly overlooked in "Provide GNU coreutils in the runtime" (a0b6609).

Related-to: nextstrain/oropouche#18 (comment)

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They're provided in our other runtimes (almost by happenstance, as part
of the underlying OS image) and having them available in all runtimes
makes it much easier to write portable programs without having to deal
with GNU vs. BSD differences.

Note that typically these GNU programs would already be available in the
Conda runtime on Linux (via the host system), but not the Conda runtime
on macOS (unless installed separately, e.g. via Homebrew).  So
explicitly including the GNU-flavored programs here increases
consistency, isolation, and portability of the runtime.

These were ostensibly overlooked in "Provide GNU coreutils in the
runtime" (a0b6609).

Related-to: <nextstrain/oropouche#18 (comment)>
@tsibley tsibley merged commit 4a6732d into main Oct 10, 2024
34 checks passed
@tsibley tsibley deleted the trs/more-gnu branch October 10, 2024 17:57
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2 participants