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Exclude outlier sequences flagged by Hill et al 2024 (#84)
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Excluded 40 genomes that were found as outliers due to re-sequencing commonly used viral stocks by Hill et al 2024

Following outlier format reported in [issue 83](#83 (comment))
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@Rohit-Satyam
Rohit-Satyam authored Oct 14, 2024
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40 changes: 40 additions & 0 deletions phylogenetic/config/exclude.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -897,3 +897,43 @@ OR389026 # denv2 many Ns
OR389325 # denv2 many Ns
OR389023 # denv2 many Ns
OR389307 # denv2 many Ns
MK506262 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KU094071 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KM204119 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
EU848545 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MF576311 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MW945433 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MT076937 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MH613984 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MH613985 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MH613986 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MK506264 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MK506263 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KU094070 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KM204118 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KF704358 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KF704357 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KF704354 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KF704355 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KJ918750 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KF704356 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
HQ891023 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
HQ891024 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
GQ398268 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
FJ906959 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
FJ390389 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
EU854293 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KY586699 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
OP809583 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MT076948 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MK506265 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
JN697379 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KM190936 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MW793460 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MT076955 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KY586824 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KY586825 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MW793459 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KY586823 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
KY586826 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)
MK506266 # Outlier according to publication Hill et al, 2024 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11426435/)

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