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Don't replace empty strain names
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kimandrews committed Jan 31, 2024
1 parent 0e39ced commit 56bfad6
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2 changes: 1 addition & 1 deletion ingest/config/defaults.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -65,7 +65,7 @@ curate:
# Currently accepts any characters because we do not have a clear standard for strain names across pathogens
strain_regex: '^.+$'
# Back up strain name field to use if 'strain' doesn't match regex above
strain_backup_fields: ['accession']
strain_backup_fields: []
# List of date fields to standardize to ISO format YYYY-MM-DD
date_fields: ['date', 'date_released', 'date_updated']
# List of expected date formats that are present in the date fields provided above
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