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ingest: Move intermediate file to data directory
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Change the output folder for all_metadata.tsv
from ./results to ./data
Follow up to [#10 (comment)](#10 (comment))
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kimandrews committed Feb 20, 2024
1 parent 75df4da commit f3fe0c1
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions ingest/rules/curate.smk
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ REQUIRED INPUTS:
OUTPUTS:
metadata = results/subset_metadata.tsv
metadata = results/metadata.tsv
sequences = results/sequences.fasta
"""
Expand Down Expand Up @@ -61,7 +61,7 @@ rule curate:
all_geolocation_rules="data/all-geolocation-rules.tsv",
annotations=config["curate"]["annotations"],
output:
metadata="results/all_metadata.tsv",
metadata="data/all_metadata.tsv",
sequences="results/sequences.fasta",
log:
"logs/curate.txt",
Expand Down Expand Up @@ -118,7 +118,7 @@ rule curate:

rule subset_metadata:
input:
metadata="results/all_metadata.tsv",
metadata="data/all_metadata.tsv",
output:
subset_metadata="results/metadata.tsv",
params:
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