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Oropouche blog post #1040

Merged
merged 11 commits into from
Oct 22, 2024
Merged

Oropouche blog post #1040

merged 11 commits into from
Oct 22, 2024

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miparedes
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@miparedes miparedes commented Oct 18, 2024

Description of proposed changes

This PR adds in the blogpost for the new oropouche build as well as the associated images.

preview rendered blog post

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@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 18, 2024 18:00 Inactive
@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 18, 2024 18:03 Inactive
@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 18, 2024 18:05 Inactive
@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 18, 2024 18:14 Inactive
@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 18, 2024 18:33 Inactive
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@genehack genehack left a comment

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+1 in general, along with a suggestion to perhaps add a short intro paragraph at the very beginning that explicitly says something like, "we are pleased to announce the availability of a Oropouche phylogeny dataset on Nextstrain.org" and maybe also work in a "we are interested in feedback from Oropouche researchers about any aspects of this data set"

---
author: "Miguel Paredes, James Hadfield, John Anderson, Jover Lee, Trevor Bedford"
date: "2024-10-18"
title: "Phylogenetic analysis of Oropuche Virus"
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not sure what the prevailing style is across current blog posts, but I would suggest either title-casing the whole thing, or down-casing "Virus"...

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agreed! I updated this in the most recent commit, and suggestion actually highlighted out to me that "Oropouche" is mispelled above so I went ahead and fixed that. I also added in an intro paragraph as per your suggestion

@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 22, 2024 17:39 Inactive
@nextstrain-bot nextstrain-bot temporarily deployed to nextstrain-s-oropouche--wy8wpr October 22, 2024 17:52 Inactive
I don't like including the panel title, legend caret, bar and tabs in screenshots. You can't actually click on these as affordances and they are just distractions in this setting.

Additionally, I added "Divergence" to the x axis. It needs to be labeled, while "Date" is obvious.
@trvrb trvrb temporarily deployed to nextstrain-s-oropouche--wy8wpr October 22, 2024 18:21 Inactive
I like highlighting that there's a specific URL that corresponds to the viz shown in the screenshot. I've added these as "Available as..." to each figure legend.

Also, I've cleaned up some of these URLs. For example `p=grid` vs `p=full` will interact strongly with the user's current screen width, eg, you don't want a link to `p=grid` on a phone. Better to just leave these out.

Also, the M and S figure is showing separate trees rather than tanglegram.

I just removed `dmin=1986-01-01`. This is not what the figure is showing. Unfortunately we don't have a way to directly link to this zoomed clade. If we wanted this we could add an "outbreak" (or something else) clade label, but I don't think it's terribly important.

Also, I removed white-space in line endings.
@trvrb trvrb temporarily deployed to nextstrain-s-oropouche--wy8wpr October 22, 2024 18:41 Inactive
@trvrb trvrb temporarily deployed to nextstrain-s-oropouche--wy8wpr October 22, 2024 18:43 Inactive
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I just made some small fixes to screenshots and URL linkouts. This is good to be published now from my perspective.

@miparedes miparedes merged commit 1fc2061 into master Oct 22, 2024
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@miparedes miparedes deleted the oropouche_blogpost branch October 22, 2024 18:49
@miparedes miparedes restored the oropouche_blogpost branch October 23, 2024 17:51
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6 participants