v1.0.0#66

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Commits on Aug 3, 2024

Commits on Aug 6, 2024

Update README.md

nictru
and
mashehu
authored
Update README.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Update nextflow_schema.json

nictru
and
mashehu
authored
Update nextflow_schema.json

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
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Update docs/usage.md

nictru
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mashehu
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Update docs/usage.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Update docs/output.md

nictru
and
mashehu
authored
Fix syntax error in nextflow_schema.json
nictru
committed
Write pipeline name in standard formatting in output docs
nictru
committed
Update bsj_reads help text
nictru
committed
Merge pull request #159 from nf-core/150-problems-with-empty-annotation-intersection
nictru
authored
Adding mirna_expression param to subworkflow mirna_prediction

mweyrich28
authored and
nictru
committed
Adding mirna_expression param to config

mweyrich28
authored and
nictru
committed
Adding mirna_expression param to nextflow_schema.json

mweyrich28
authored and
nictru
committed
adding process DESEQ2_NORMALIZATION

Malte Weyrich
authored and
nictru
committed
Adding deseq2 module and mirna normalization module (including params)

Malte Weyrich
authored and
nictru
committed
Adding formatting of mirna prediction output

Malte Weyrich
authored and
nictru
committed
embedding mirna filtering and output formatting in mirna_prediction subworkflow

Malte Weyrich
authored and
nictru
committed
extending miranda output formatting to ignore unwanted prefix

Malte Weyrich
authored and
nictru
committed
implementing concatenation of mirna predictions, work in progress

Malte Weyrich
authored and
nictru
committed
preparing majority vote

Malte Weyrich
authored and
nictru
committed
fixing channel structure of predictions for cat cat

Malte Weyrich
authored and
nictru
committed
Embedding majority vote for mirna predictions

mweyrich28
authored and
nictru
committed
updating miranda to majority gawk

mweyrich28
authored and
nictru
committed
adding compute correlations module

mweyrich28
authored and
nictru
committed
todos

mweyrich28
authored and
nictru
committed
Replace tabs with spaces
nictru
committed
Implement MIRNA_BINDINGSITES subworkflow
nictru
committed
Add versions capture for MIRNA_BINDINGSITES
nictru
committed
Use full transcriptome in miRNA binding site detection
nictru
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Use BIOAWK for ADD_BACKSPLICE
nictru
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Pass correct count info to mirna_prediction
nictru
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Implement transcriptome batch splitting in MIRNA_BINDINGSITES
nictru
committed
Improve targetscan input preparation
nictru
committed
Improve majority vote script
nictru
committed
Improve styling
nictru
committed
Add majority targets output
nictru
committed
Transpose binding site output
nictru
committed
Start refactoring correlation
nictru
committed
Implement first draft of correlation analysis
nictru
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Save correlation results
nictru
committed
Switch correlation output to TSV
nictru
committed
Handle correlation output channels
nictru
committed
fixing MIRNA_TARGETS

mweyrich28
authored and
nictru
committed
Filtering mature based on filtered mirnas

mweyrich28
authored and
nictru
committed
Adding missing .collect() to MIRANDA process

mweyrich28
authored and
nictru
committed
fixing filtering of mature

mweyrich28
authored and
nictru
committed
Cleaning up

mweyrich28
authored and
nictru
committed
Adding param to switch between spearman and pearson correlation

mweyrich28
authored and
nictru
committed
More resources for MAJORITY_VOTE

mweyrich28
authored and
nictru
committed
removing todo comment

mweyrich28
authored and
nictru
committed
removing TODO comment

mweyrich28
authored and
nictru
committed
correlations output set to optional

mweyrich28
authored and
nictru
committed
Fix major rebase problems
nictru
committed
Fix small bug with backsplice junction adding
nictru
committed
Improve mirna prediction formatting
nictru
committed
Improve output structure for mirna prediction
nictru
committed
fixing formatting in modules
mweyrich28
committed
adjusting mirna_min_reads to match nextflow_schema
mweyrich28
committed
fixing formatting and adding missing allOf field for mirna_processing_options
mweyrich28
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removing non used configs in modules.config
mweyrich28
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updating nf-core modules
mweyrich28
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Revert "updating nf-core modules"
mweyrich28
committed
only updating necessary modules
mweyrich28
committed
fixing pattern for input file of mirna_expression
mweyrich28
committed

Commits on Aug 8, 2024

Commits on Aug 9, 2024

Merge pull request #168 from nf-core/per-tool-quantification
nictru
authored

Commits on Aug 24, 2024

Commits on Aug 25, 2024

Update ciriquant image
nictru
committed

Commits on Aug 26, 2024

Commits on Sep 24, 2024

Commits on Sep 29, 2024

Improve clustering
nictru
committed

Commits on Oct 16, 2024

Commits on Oct 18, 2024

Merge pull request #175 from nf-core/nf-core-template-merge-3.0.2
mweyrich28
authored

Commits on Dec 16, 2024