DSL2: Pull input files from reference sheet columns #2422

Job	Run time
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...	1m 6s
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...	1m 9s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...	1m 8s
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2)	1m 8s
Run pipeline with test data (23.04.0, -profile test,docker --skip_preprocessing)	1m 9s
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...	1m 8s
Run pipeline with test data (23.04.0, -profile test_multiref,docker)	50s
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...	1m 8s
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...	1m 7s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...	1m 9s
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2)	1m 6s
Run pipeline with test data (latest-everything, -profile test,docker --skip_preprocessing)	1m 7s
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...	1m 6s
Run pipeline with test data (latest-everything, -profile test_multiref,docker)	55s
	15m 16s

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