Use BAM_RSEQC subworkflow #368
edmundmillerAnnotations
31 errors and 13 warnings
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HISAT2.Should run with defaults:
HISAT2#L1
Assertion failed:
2 of 3 assertions failed
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HISAT2.Should run with defaults:
HISAT2#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/hisat2.nf.test docker NF-23.04.0
Process completed with exit code 1.
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workflows/tests/aligner/hisat2.nf.test docker NF-23.04.0
Process completed with exit code 1.
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workflows/tests/aligner/hisat2.nf.test docker NF-
Process completed with exit code 1.
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workflows/tests/aligner/hisat2.nf.test docker NF-
Process completed with exit code 1.
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Bowtie2.Should run with defaults:
Bowtie2#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/bowtie2.nf.test docker NF-23.04.0
Process completed with exit code 1.
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workflows/tests/aligner/bowtie2.nf.test docker NF-23.04.0
Process completed with exit code 1.
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Bowtie2.Should run with defaults:
Bowtie2#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/bowtie2.nf.test docker NF-
Process completed with exit code 1.
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workflows/tests/aligner/bowtie2.nf.test docker NF-
Process completed with exit code 1.
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DRAGMAP.Should run with defaults:
DRAGMAP#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/dragmap.nf.test docker NF-23.04.0
Process completed with exit code 1.
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workflows/tests/aligner/dragmap.nf.test docker NF-23.04.0
Process completed with exit code 1.
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DRAGMAP.Should run with defaults:
DRAGMAP#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/dragmap.nf.test docker NF-
Process completed with exit code 1.
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workflows/tests/aligner/dragmap.nf.test docker NF-
Process completed with exit code 1.
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BWA.Should run with defaults:
BWA#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/bwa.nf.test docker NF-23.04.0
Process completed with exit code 1.
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workflows/tests/aligner/bwa.nf.test docker NF-23.04.0
Process completed with exit code 1.
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BWA.Should run with defaults:
BWA#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/bwa.nf.test docker NF-
Process completed with exit code 1.
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workflows/tests/aligner/bwa.nf.test docker NF-
Process completed with exit code 1.
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STAR.Should run with defaults:
STAR#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/star.nf.test docker NF-23.04.0
Process completed with exit code 1.
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workflows/tests/aligner/star.nf.test docker NF-23.04.0
Process completed with exit code 1.
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STAR.Should run with defaults:
STAR#L1
Assertion failed:
1 of 3 assertions failed
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workflows/tests/aligner/star.nf.test docker NF-
Process completed with exit code 1.
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workflows/tests/aligner/star.nf.test docker NF-
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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Check for changes
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/hisat2.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/hisat2.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/bwamem2.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/bowtie2.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/bowtie2.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/dragmap.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/dragmap.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/bwamem2.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/bwa.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/bwa.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/star.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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workflows/tests/aligner/star.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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