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Update Dockerfile
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binarybottle committed May 5, 2017
1 parent 855754a commit 09e9230
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions install/Dockerfile.mindboggle.complete
Original file line number Diff line number Diff line change
Expand Up @@ -102,7 +102,7 @@ RUN apt-get update -qq && \
# PATH=$FREESURFER_HOME/bin:$FSFAST_HOME/bin:$FREESURFER_HOME/tktools:$MINC_BIN_DIR:$PATH

#-----------------------------------------------------------------------------
# Install ANTS
# Install ANTS (tags/v2.1.0rc3)
#-----------------------------------------------------------------------------
# USER root
# RUN apt-get update -qq && apt-get install -yq --no-install-recommends \
Expand All @@ -113,7 +113,7 @@ RUN apt-get update -qq && \
# WORKDIR /tmp
# RUN git clone https://github.com/stnava/ANTs.git && \
# cd ANTs && \
# git checkout 767f756bc0e423cd503a24c806b6578aaeb5b82f && \
# git checkout tags/v2.1.0rc3 && \
# mkdir build && cd build && cmake .. && make && \
# mkdir -p /opt/ants && \
# cp bin/* /opt/ants && cp ../Scripts/* /opt/ants && \
Expand Down Expand Up @@ -174,7 +174,7 @@ RUN apt-get update -qq && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

#-----------------------------------------------------------------------------
# Install nipype
# Install nipype (git checkout 368e1844b164b599496db817f095c53c72332b9f)
#-----------------------------------------------------------------------------
USER $NB_USER
RUN git clone https://github.com/nipy/nipype && \
Expand Down Expand Up @@ -212,6 +212,7 @@ RUN curl -sSL https://osf.io/rh9km/?action=download\&version=2 -o templates.zip

#-----------------------------------------------------------------------------
# Install roygbiv for mindboggle output visualization
# (git checkout 368e1844b164b599496db817f095c53c72332b9f)
#-----------------------------------------------------------------------------
USER $NB_USER
WORKDIR /opt/src
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