Add broad testing for Python 3.13 #608
Workflow file for this run
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| name: Build and test | ||
| # This file tests the claimed support range of NiBabel including | ||
| # | ||
| # * Operating systems: Linux, Windows (x64 & x86), OSX | ||
| # * Dependencies: minimum requirements, optional requirements | ||
| # * Installation methods: setup.py, sdist, wheel, archive | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| - maint/* | ||
| tags: | ||
| - "*" | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| - maint/* | ||
| schedule: | ||
| - cron: '0 0 * * 1' | ||
| # Allow job to be triggered manually from GitHub interface | ||
| workflow_dispatch: | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| # Force tox and pytest to use color | ||
| env: | ||
| FORCE_COLOR: true | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
| permissions: | ||
| contents: read | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: 3 | ||
| - run: pip install --upgrade build twine | ||
| - name: Build sdist and wheel | ||
| run: python -m build | ||
| - run: twine check dist/* | ||
| - name: Build git archive | ||
| run: mkdir archive && git archive -v -o archive/nibabel-archive.tgz HEAD | ||
| - name: Upload sdist and wheel artifacts | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: dist | ||
| path: dist/ | ||
| - name: Upload git archive artifact | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: archive | ||
| path: archive/ | ||
| test-package: | ||
| runs-on: ubuntu-latest | ||
| needs: [build] | ||
| strategy: | ||
| matrix: | ||
| package: ['wheel', 'sdist', 'archive'] | ||
| steps: | ||
| - name: Download sdist and wheel artifacts | ||
| if: matrix.package != 'archive' | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| name: dist | ||
| path: dist/ | ||
| - name: Download git archive artifact | ||
| if: matrix.package == 'archive' | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| name: archive | ||
| path: archive/ | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: 3 | ||
| - name: Display Python version | ||
| run: python -c "import sys; print(sys.version)" | ||
| - name: Update pip | ||
| run: pip install --upgrade pip | ||
| - name: Install wheel | ||
| if: matrix.package == 'wheel' | ||
| run: pip install dist/nibabel-*.whl | ||
| - name: Install sdist | ||
| if: matrix.package == 'sdist' | ||
| run: pip install dist/nibabel-*.tar.gz | ||
| - name: Install archive | ||
| if: matrix.package == 'archive' | ||
| run: pip install archive/nibabel-archive.tgz | ||
| - run: python -c 'import nibabel; print(nibabel.__version__)' | ||
| - name: Install minimum test dependencies | ||
| run: pip install nibabel[test] | ||
| - name: Run tests | ||
| run: pytest --doctest-modules --doctest-plus -v --pyargs nibabel -n auto | ||
| test: | ||
| # Check each OS, all supported Python, minimum versions and latest releases | ||
| runs-on: ${{ matrix.os }} | ||
| continue-on-error: ${{ matrix.dependencies == 'pre' }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: ['ubuntu-latest', 'windows-latest', 'macos-13', 'macos-latest'] | ||
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.13t"] | ||
| architecture: ['x86', 'x64', 'arm64'] | ||
| dependencies: ['full', 'pre'] | ||
| include: | ||
| # Basic dependencies only | ||
| - os: ubuntu-latest | ||
| python-version: "3.9" | ||
| architecture: 'x64' | ||
| dependencies: 'none' | ||
| # Absolute minimum dependencies | ||
| - os: ubuntu-latest | ||
| python-version: "3.9" | ||
| architecture: 'x64' | ||
| dependencies: 'min' | ||
| exclude: | ||
| # Use ubuntu-latest to cover the whole range of Python. For Windows | ||
| # and OSX, checking oldest and newest should be sufficient. | ||
| - os: windows-latest | ||
| python-version: "3.10" | ||
| - os: windows-latest | ||
| python-version: "3.11" | ||
| - os: windows-latest | ||
| python-version: "3.12" | ||
| - os: macos-13 | ||
| python-version: "3.10" | ||
| - os: macos-13 | ||
| python-version: "3.11" | ||
| - os: macos-13 | ||
| python-version: "3.12" | ||
| - os: macos-latest | ||
| python-version: "3.10" | ||
| - os: macos-latest | ||
| python-version: "3.11" | ||
| - os: macos-latest | ||
| python-version: "3.12" | ||
| ## Unavailable architectures | ||
| # x86 is available for Windows | ||
| - os: ubuntu-latest | ||
| architecture: x86 | ||
| - os: macos-latest | ||
| architecture: x86 | ||
| - os: macos-13 | ||
| architecture: x86 | ||
| # arm64 is available for macos-14+ | ||
| - os: ubuntu-latest | ||
| architecture: arm64 | ||
| - os: windows-latest | ||
| architecture: arm64 | ||
| - os: macos-13 | ||
| architecture: arm64 | ||
| # x64 is not available for macos-14+ | ||
| - os: macos-latest | ||
| architecture: x64 | ||
| ## Reduced support | ||
| # Drop pre tests for macos-13 | ||
| - os: macos-13 | ||
| dependencies: pre | ||
| # Drop pre tests for SPEC-0-unsupported Python versions | ||
| - python-version: '3.9' | ||
| dependencies: pre | ||
| - python-version: '3.10' | ||
| dependencies: pre | ||
| env: | ||
| DEPENDS: ${{ matrix.dependencies }} | ||
| ARCH: ${{ !contains(fromJSON('["none", "min"]'), matrix.dependencies) && matrix.architecture }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| submodules: recursive | ||
| fetch-depth: 0 | ||
| - name: Install the latest version of uv | ||
| uses: astral-sh/setup-uv@v4 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| if: "!endsWith(matrix.python-version, 't')" | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| architecture: ${{ matrix.architecture }} | ||
| allow-prereleases: true | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| if: endsWith(matrix.python-version, 't') | ||
| run: | | ||
| uv python install ${IMPL}-${VERSION}-${OS%-*}-${ARCH}-${LIBC} | ||
| env: | ||
| IMPL: cpython | ||
| VERSION: ${{ matrix.python-version }} | ||
| # uv expects linux|macos|windows, we can drop the -* but need to rename ubuntu | ||
| OS: ${{ matrix.os == 'ubuntu-latest' && 'linux' || matrix.os }} | ||
| # uv expects x86, x86_64, aarch64 (among others) | ||
| ARCH: ${{ fromJSON('{"x86": "x86", "x64": "x86_64", "arm64": "aarch64"}')[matrix.architecture] }} | ||
| # windows and macos have no options, gnu is the only option for the archs | ||
| LIBC: ${{ matrix.os == 'ubuntu-latest' && 'gnu' || 'none' }} | ||
| - name: Display Python version | ||
| run: python -c "import sys; print(sys.version)" | ||
| - name: Install tox | ||
| run: | | ||
| uv tool install tox --with=git+https://github.com/effigies/tox-gh-actions@abiflags --with=tox-uv | ||
| env: | ||
| UV_PYTHON: ${{ matrix.python-version }} | ||
| - name: Show tox config | ||
| run: tox c | ||
| - name: Run tox | ||
| run: tox -vv --exit-and-dump-after 1200 | ||
| - uses: codecov/codecov-action@v5 | ||
| if: ${{ always() }} | ||
| with: | ||
| files: cov.xml | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| - name: Upload pytest test results | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.dependencies }}-${{ matrix.architecture }} | ||
| path: test-results.xml | ||
| if: ${{ always() }} | ||
| checks: | ||
| runs-on: 'ubuntu-latest' | ||
| continue-on-error: true | ||
| strategy: | ||
| matrix: | ||
| check: ['style', 'doctest', 'typecheck', 'spellcheck'] | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: 3 | ||
| - name: Display Python version | ||
| run: python -c "import sys; print(sys.version)" | ||
| - name: Show tox config | ||
| run: pipx run tox c | ||
| - name: Show tox config (this call) | ||
| run: pipx run tox c -e ${{ matrix.check }} | ||
| - name: Run check | ||
| run: pipx run tox -e ${{ matrix.check }} | ||
| publish: | ||
| runs-on: ubuntu-latest | ||
| environment: "Package deployment" | ||
| needs: [test, test-package] | ||
| permissions: | ||
| # Required for trusted publishing | ||
| id-token: write | ||
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | ||
| steps: | ||
| - uses: actions/download-artifact@v4 | ||
| with: | ||
| name: dist | ||
| path: dist/ | ||
| - uses: pypa/gh-action-pypi-publish@release/v1 | ||
