API

update docs.yml #129

	name: API

	# build the documentation whenever there are new commits affecting documentation
	on:
	push:
	branches:
	- main
	paths:
	- '**/conf.py'
	- '**.yml'
	- '**.rst'


	permissions:
	contents: read
	pages: write

	jobs:
	docs:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v3

	- name: Install dependencies
	run: \|
	pip install sphinx myst_parser pytest pybedtools pysam numpy scipy pandas pyBigWig matplotlib deeptools ortools rocco

	- name: Sphinx build
	run: \|
	sphinx-build docs docs/build_

	- uses: actions/upload-pages-artifact@v1
	with:
	path: docs/build_/

	deploy:
	needs: docs
	runs-on: ubuntu-latest
	permissions:
	pages: write
	id-token: write
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	steps:
	- id: deployment
	uses: actions/deploy-pages@v2

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