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Remove all SubClassOf axioms annotated with is_inferred:true #2427

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Fixes #2426

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#gogoeditdiff

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There are 825 cases that were removed, so the gogoeditdiff failed because the comment was too large to be posted.

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anitacaron commented Jul 8, 2024

Diff on the classified (not complete)

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-07-08/cl-simple.owl
  • Loaded from: file:/work/src/ontology/cl-simple.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-07-08/cl-simple.owl
  • Loaded from: file:/work/src/ontology/cl-branch-simple.owl

Ontology imports

Ontology annotations

B cell http://purl.obolibrary.org/obo/CL_0000236

Removed

Added

B-1 B cell http://purl.obolibrary.org/obo/CL_0000819

Removed

Added

B-1a B cell http://purl.obolibrary.org/obo/CL_0000820

Removed

Added

B-1b B cell http://purl.obolibrary.org/obo/CL_0000821

Removed

Added

B-2 B cell http://purl.obolibrary.org/obo/CL_0000822

Removed

Added

B220-low CD38-negative unswitched memory B cell http://purl.obolibrary.org/obo/CL_0002113

Added

B220-low CD38-positive IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002123

Added

B220-low CD38-positive naive B cell http://purl.obolibrary.org/obo/CL_0002110

Added

B220-low CD38-positive unswitched memory B cell http://purl.obolibrary.org/obo/CL_0002116

Added

B220-positive CD38-negative unswitched memory B cell http://purl.obolibrary.org/obo/CL_0002112

Removed

Added

B220-positive CD38-positive IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002122

Removed

Added

B220-positive CD38-positive naive B cell http://purl.obolibrary.org/obo/CL_0002109

Removed

Added

B220-positive CD38-positive unswitched memory B cell http://purl.obolibrary.org/obo/CL_0002115

Removed

Added

Be cell http://purl.obolibrary.org/obo/CL_0000968

Removed

Added

Be1 Cell http://purl.obolibrary.org/obo/CL_0000943

Removed

Added

Be2 cell http://purl.obolibrary.org/obo/CL_0000944

Removed

Added

Bm1 B cell http://purl.obolibrary.org/obo/CL_0000961

Removed

Added

Bm2 B cell http://purl.obolibrary.org/obo/CL_0000962

Removed

Added

Bm2' B cell http://purl.obolibrary.org/obo/CL_0000964

Removed

Added

Bm3 B cell http://purl.obolibrary.org/obo/CL_0000965

Removed

Added

Bm3-delta B cell http://purl.obolibrary.org/obo/CL_0000963

Removed

Added

Bm4 B cell http://purl.obolibrary.org/obo/CL_0000966

Removed

Added

CD103-negative, langerin-positive lymph node dendritic cell http://purl.obolibrary.org/obo/CL_0002510

Removed

Added

CD103-positive dendritic cell http://purl.obolibrary.org/obo/CL_0002461

Removed

Added

CD103-positive, langerin-positive lymph node dendritic cell http://purl.obolibrary.org/obo/CL_0002509

Removed

Added

CD115-positive monocyte http://purl.obolibrary.org/obo/CL_0001022

Removed

Added

CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell http://purl.obolibrary.org/obo/CL_0002512

Removed

Added

CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell http://purl.obolibrary.org/obo/CL_0002511

Removed

Added

CD11b-positive dendritic cell http://purl.obolibrary.org/obo/CL_0002465

Removed

Added

CD11c-low plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0000989

Removed

Added

CD11c-negative plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0000991

Removed

Added

CD14-low, CD16-positive monocyte http://purl.obolibrary.org/obo/CL_0002396

Removed

Added

CD14-positive dermal dendritic cell http://purl.obolibrary.org/obo/CL_0002526

Removed

Added

CD14-positive, CD16-negative classical monocyte http://purl.obolibrary.org/obo/CL_0002057

Removed

Added

CD141-positive myeloid dendritic cell http://purl.obolibrary.org/obo/CL_0002394

Removed

Added

CD16-positive myeloid dendritic cell http://purl.obolibrary.org/obo/CL_0002532

Removed

Added

CD1a-positive Langerhans cell http://purl.obolibrary.org/obo/CL_0001014

Removed

Added

CD1a-positive dermal dendritic cell http://purl.obolibrary.org/obo/CL_0002529

Removed

Added

CD1c-positive myeloid dendritic cell http://purl.obolibrary.org/obo/CL_0002399

Removed

Added

CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0002037

Removed

Added

CD22-positive, CD38-low small pre-B cell http://purl.obolibrary.org/obo/CL_0002053

Removed

Added

CD24-negative CD38-negative IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002121

Removed

Added

CD24-positive CD38-negative IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002120

Removed

Added

CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell http://purl.obolibrary.org/obo/CL_4030038

Added

CD24-positive, CD4 single-positive thymocyte http://purl.obolibrary.org/obo/CL_0002432

Removed

Added

CD24-positive, CD8 single-positive thymocyte http://purl.obolibrary.org/obo/CL_0002434

Removed

Added

CD25-positive, CD27-positive immature gamma-delta T cell http://purl.obolibrary.org/obo/CL_0002126

Removed

Added

CD27-negative gamma-delta T cell http://purl.obolibrary.org/obo/CL_0002125

Removed

Added

CD27-positive gamma-delta T cell http://purl.obolibrary.org/obo/CL_0002124

Removed

Added

CD34-negative, CD41-positive, CD42-positive megakaryocyte cell http://purl.obolibrary.org/obo/CL_0002026

Removed

Added

CD34-negative, GlyA-negative proerythroblast http://purl.obolibrary.org/obo/CL_0002004

Removed

Added

CD34-positive, CD38-negative hematopoietic stem cell http://purl.obolibrary.org/obo/CL_0001024

Removed

Added

CD34-positive, CD38-negative multipotent progenitor cell http://purl.obolibrary.org/obo/CL_0002043

Removed

Added

CD34-positive, CD38-positive common lymphoid progenitor http://purl.obolibrary.org/obo/CL_0001021

Removed

Added

CD34-positive, CD38-positive common myeloid progenitor http://purl.obolibrary.org/obo/CL_0001026

Added

CD34-positive, CD38-positive eosinophil progenitor cell http://purl.obolibrary.org/obo/CL_0002008

Removed

Added

CD34-positive, CD38-positive granulocyte monocyte progenitor http://purl.obolibrary.org/obo/CL_0002001

Removed

Added

CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell http://purl.obolibrary.org/obo/CL_0002005

Removed

Added

CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell http://purl.obolibrary.org/obo/CL_0002025

Removed

Added

CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell http://purl.obolibrary.org/obo/CL_0002023

Removed

Added

CD34-positive, GlyA-negative erythroid progenitor cell http://purl.obolibrary.org/obo/CL_0002003

Removed

Added

CD38-high pre-BCR positive cell http://purl.obolibrary.org/obo/CL_0002051

Removed

Added

CD38-negative IgG memory B cell http://purl.obolibrary.org/obo/CL_0002108

Removed

Added

CD38-negative IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002118

Removed

Added

CD38-negative immature B cell http://purl.obolibrary.org/obo/CL_0002055

Removed

Added

CD38-negative naive B cell http://purl.obolibrary.org/obo/CL_0002102

Removed

Added

CD38-negative unswitched memory B cell http://purl.obolibrary.org/obo/CL_0002111

Removed

Added

CD38-positive IgG memory B cell http://purl.obolibrary.org/obo/CL_0002105

Removed

Added

CD38-positive IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002119

Removed

Added

CD38-positive naive B cell http://purl.obolibrary.org/obo/CL_0002101

Removed

Added

CD38-positive unswitched memory B cell http://purl.obolibrary.org/obo/CL_0002114

Removed

Added

CD4-intermediate, CD8-positive double-positive thymocyte http://purl.obolibrary.org/obo/CL_0002430

Removed

Added

CD4-negative CD8-negative gamma-delta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000803

Removed

Added

CD4-negative, CD8-negative type I NK T cell http://purl.obolibrary.org/obo/CL_0000924

Removed

Added

CD4-negative, CD8-negative, alpha-beta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000935

Removed

Added

CD4-positive helper T cell http://purl.obolibrary.org/obo/CL_0000492

Removed

Added

CD4-positive type I NK T cell http://purl.obolibrary.org/obo/CL_0000923

Removed

Added

CD4-positive, CD25-positive, alpha-beta regulatory T cell http://purl.obolibrary.org/obo/CL_0000792

Removed

Added

CD4-positive, CD8-intermediate double-positive thymocyte http://purl.obolibrary.org/obo/CL_0002431

Removed

Added

CD4-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000624

Removed

Added

CD4-positive, alpha-beta cytotoxic T cell http://purl.obolibrary.org/obo/CL_0000934

Removed

Added

CD4-positive, alpha-beta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000793

Removed

Added

CD4-positive, alpha-beta memory T cell, CD45RO-positive http://purl.obolibrary.org/obo/CL_0001204

Removed

Added

CD4-positive, alpha-beta thymocyte http://purl.obolibrary.org/obo/CL_0000810

Removed

Added

CD69-positive double-positive thymocyte http://purl.obolibrary.org/obo/CL_0002429

Removed

Added

CD69-positive, CD4-positive single-positive thymocyte http://purl.obolibrary.org/obo/CL_0002433

Removed

Added

CD69-positive, CD8-positive single-positive thymocyte http://purl.obolibrary.org/obo/CL_0002435

Removed

Added

CD7-negative lymphoid progenitor cell http://purl.obolibrary.org/obo/CL_0001027

Removed

Added

CD7-positive lymphoid progenitor cell http://purl.obolibrary.org/obo/CL_0001028

Removed

Added

CD71-low, GlyA-positive polychromatic erythroblast http://purl.obolibrary.org/obo/CL_0002016

Removed

Added

CD71-negative, GlyA-positive orthochromatic erythroblast http://purl.obolibrary.org/obo/CL_0002018

Removed

Added

CD8-alpha alpha positive, gamma-delta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000802

Removed

Added

CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000915

Removed

Added

CD8-alpha-beta-positive, alpha-beta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000796

Removed

Added

CD8-positive, CD25-positive, alpha-beta regulatory T cell http://purl.obolibrary.org/obo/CL_0000919

Removed

Added

CD8-positive, CD28-negative, alpha-beta regulatory T cell http://purl.obolibrary.org/obo/CL_0000920

Removed

Added

CD8-positive, CXCR3-positive, alpha-beta regulatory T cell http://purl.obolibrary.org/obo/CL_0001041

Removed

Added

CD8-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000625

Removed

Added

CD8-positive, alpha-beta cytokine secreting effector T cell http://purl.obolibrary.org/obo/CL_0000908

Removed

Added

CD8-positive, alpha-beta cytotoxic T cell http://purl.obolibrary.org/obo/CL_0000794

Removed

Added

CD8-positive, alpha-beta memory T cell, CD45RO-positive http://purl.obolibrary.org/obo/CL_0001203

Removed

Added

CD8-positive, alpha-beta regulatory T cell http://purl.obolibrary.org/obo/CL_0000795

Removed

Added

CD8-positive, alpha-beta thymocyte http://purl.obolibrary.org/obo/CL_0000811

Removed

Added

CD8_alpha-low Langerhans cell http://purl.obolibrary.org/obo/CL_0001015

Removed

Added

CD8_alpha-negative CD11b-negative dendritic cell http://purl.obolibrary.org/obo/CL_0000998

Removed

Added

CD8_alpha-negative plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0002455

Removed

Added

CD8_alpha-positive CD11b-negative dendritic cell http://purl.obolibrary.org/obo/CL_0001000

Removed

Added

CD8_alpha-positive plasmacytoid dendritic cell http://purl.obolibrary.org/obo/CL_0002456

Removed

Added

CD8alpha-negative thymic conventional dendritic cell http://purl.obolibrary.org/obo/CL_0002460

Removed

Added

CD8alpha-positive thymic conventional dendritic cell http://purl.obolibrary.org/obo/CL_0002059

Removed

Added

CD9-positive, CD41-positive megakaryocyte cell http://purl.obolibrary.org/obo/CL_0002027

Removed

Added

Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell http://purl.obolibrary.org/obo/CL_0002454

Removed

Added

DN1 thymic pro-T cell http://purl.obolibrary.org/obo/CL_0000894

Removed

Added

DN2a thymocyte http://purl.obolibrary.org/obo/CL_0002423

Removed

Added

DN2b thymocyte http://purl.obolibrary.org/obo/CL_0002424

Removed

Added

F4/80-negative adipose macrophage http://purl.obolibrary.org/obo/CL_0002478

Removed

Added

F4/80-positive adipose macrophage http://purl.obolibrary.org/obo/CL_0002479

Removed

Added

Fc-epsilon RIalpha-high basophil progenitor cell http://purl.obolibrary.org/obo/CL_0002030

Removed

Added

Fc-epsilon RIalpha-low mast cell progenitor http://purl.obolibrary.org/obo/CL_0002029

Removed

Added

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Diff on the classified (not complete) cont.

GlyA-positive basophilic erythroblast http://purl.obolibrary.org/obo/CL_0002013

Removed

Added

GlyA-positive erythrocyte http://purl.obolibrary.org/obo/CL_0002021

Removed

Added

GlyA-positive reticulocytes http://purl.obolibrary.org/obo/CL_0002020

Removed

Added

Gr1-high classical monocyte http://purl.obolibrary.org/obo/CL_0002395

Removed

Added

Gr1-high myeloid suppressor cell http://purl.obolibrary.org/obo/CL_0002467

Removed

Added

Gr1-low myeloid suppressor cell http://purl.obolibrary.org/obo/CL_0002468

Removed

Added

Gr1-low non-classical monocyte http://purl.obolibrary.org/obo/CL_0002058

Removed

Added

IgA memory B cell http://purl.obolibrary.org/obo/CL_0000973

Removed

Added

IgA plasma cell http://purl.obolibrary.org/obo/CL_0000987

Removed

Added

IgA plasmablast http://purl.obolibrary.org/obo/CL_0000984

Removed

Added

IgA short lived plasma cell http://purl.obolibrary.org/obo/CL_0000976

Removed

Added

IgD plasmablast http://purl.obolibrary.org/obo/CL_0000949

Removed

Added

IgD-negative CD38-positive IgG memory B cell http://purl.obolibrary.org/obo/CL_0002107

Removed

Added

IgD-positive CD38-positive IgG memory B cell http://purl.obolibrary.org/obo/CL_0002106

Removed

Added

IgE memory B cell http://purl.obolibrary.org/obo/CL_0000948

Removed

Added

IgE plasma cell http://purl.obolibrary.org/obo/CL_0000947

Removed

Added

IgE plasmablast http://purl.obolibrary.org/obo/CL_0000950

Removed

Added

IgE short lived plasma cell http://purl.obolibrary.org/obo/CL_0000951

Removed

Added

IgG memory B cell http://purl.obolibrary.org/obo/CL_0000979

Removed

Added

IgG plasma cell http://purl.obolibrary.org/obo/CL_0000985

Removed

Added

IgG plasmablast http://purl.obolibrary.org/obo/CL_0000982

Removed

Added

IgG short lived plasma cell http://purl.obolibrary.org/obo/CL_0000977

Removed

Added

IgG-negative class switched memory B cell http://purl.obolibrary.org/obo/CL_0002117

Removed

Added

IgG-negative double negative memory B cell http://purl.obolibrary.org/obo/CL_0002104

Removed

Added

IgG-positive double negative memory B cell http://purl.obolibrary.org/obo/CL_0002103

Removed

Added

IgM plasma cell http://purl.obolibrary.org/obo/CL_0000986

Removed

Added

IgM plasmablast http://purl.obolibrary.org/obo/CL_0000983

Removed

Added

IgM short lived plasma cell http://purl.obolibrary.org/obo/CL_0000978

Removed

Added

Kit and Sca1-positive hematopoietic stem cell http://purl.obolibrary.org/obo/CL_0001008

Removed

Added

Kit-low proerythroblast http://purl.obolibrary.org/obo/CL_0002012

Removed

Added

Kit-low, CD34-positive eosinophil progenitor cell http://purl.obolibrary.org/obo/CL_0002007

Removed

Added

Kit-negative, Ly-76 high basophilic erythroblast http://purl.obolibrary.org/obo/CL_0002014

Removed

Added

Kit-negative, Ly-76 high orthochromatophilic erythroblasts http://purl.obolibrary.org/obo/CL_0002017

Removed

Added

Kit-negative, Ly-76 high polychromatophilic erythroblast http://purl.obolibrary.org/obo/CL_0002015

Removed

Added

Kit-positive erythroid progenitor cell http://purl.obolibrary.org/obo/CL_0002000

Removed

Added

Kit-positive granulocyte monocyte progenitor http://purl.obolibrary.org/obo/CL_0002002

Removed

Added

Kit-positive macrophage dendritic cell progenitor http://purl.obolibrary.org/obo/CL_0002011

Removed

Added

Kit-positive megakaryocyte progenitor cell http://purl.obolibrary.org/obo/CL_0002024

Removed

Added

Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell http://purl.obolibrary.org/obo/CL_0002006

Removed

Added

Kit-positive, CD34-positive common myeloid progenitor http://purl.obolibrary.org/obo/CL_0001023

Removed

Added

Kit-positive, Sca1-positive common lymphoid progenitor http://purl.obolibrary.org/obo/CL_0001025

Removed

Added

Kit-positive, integrin beta7-high basophil mast progenitor cell http://purl.obolibrary.org/obo/CL_0002044

Removed

Added

Kupffer cell http://purl.obolibrary.org/obo/CL_0000091

Removed

Added

Langerhans cell http://purl.obolibrary.org/obo/CL_0000453

Removed

Added

Ly-76 high positive erythrocyte http://purl.obolibrary.org/obo/CL_0002022

Removed

Added

Ly-76 high reticulocyte http://purl.obolibrary.org/obo/CL_0002019

Removed

Added

MHC-II-high non-classical monocyte http://purl.obolibrary.org/obo/CL_0002473

Removed

Added

MHC-II-low non-classical monocyte http://purl.obolibrary.org/obo/CL_0002472

Removed

Added

MHC-II-negative classical monocyte http://purl.obolibrary.org/obo/CL_0002469

Removed

Added

MHC-II-negative non-classical monocyte http://purl.obolibrary.org/obo/CL_0002471

Removed

Added

MHC-II-positive classical monocyte http://purl.obolibrary.org/obo/CL_0002470

Removed

Added

PP cell of intestine http://purl.obolibrary.org/obo/CL_0002680

Removed

Added

Peyer's patch B cell http://purl.obolibrary.org/obo/CL_0002402

Removed

Peyer's patch macrophage http://purl.obolibrary.org/obo/CL_0000870

Removed

Added

Purkinje myocyte of atrioventricular bundle http://purl.obolibrary.org/obo/CL_1000484

Removed

Added

Purkinje myocyte of atrioventricular node http://purl.obolibrary.org/obo/CL_1000479

Removed

Added

Purkinje myocyte of internodal tract http://purl.obolibrary.org/obo/CL_1000483

Removed

Added

Purkinje myocyte of interventricular septum http://purl.obolibrary.org/obo/CL_1000376

Removed

Added

Sertoli cell http://purl.obolibrary.org/obo/CL_0000216

Removed

Added

Slamf1-negative multipotent progenitor cell http://purl.obolibrary.org/obo/CL_0002035

Removed

Added

Slamf1-positive multipotent progenitor cell http://purl.obolibrary.org/obo/CL_0002036

Removed

Added

T cell http://purl.obolibrary.org/obo/CL_0000084

Removed

Added

T follicular helper cell http://purl.obolibrary.org/obo/CL_0002038

Removed

Added

T-helper 1 cell http://purl.obolibrary.org/obo/CL_0000545

Removed

Added

T-helper 17 cell http://purl.obolibrary.org/obo/CL_0000899

Removed

Added

T-helper 2 cell http://purl.obolibrary.org/obo/CL_0000546

Removed

Added

T-helper 22 cell http://purl.obolibrary.org/obo/CL_0001042

Removed

Added

T-helper 9 cell http://purl.obolibrary.org/obo/CL_0002061

Removed

Added

T1 B cell http://purl.obolibrary.org/obo/CL_0000958

Removed

Added

T2 B cell http://purl.obolibrary.org/obo/CL_0000959

Removed

Added

T3 B cell http://purl.obolibrary.org/obo/CL_0000960

Removed

Added

Tc1 cell http://purl.obolibrary.org/obo/CL_0000917

Removed

Added

Tc17 cell http://purl.obolibrary.org/obo/CL_0002128

Removed

Added

Tc2 cell http://purl.obolibrary.org/obo/CL_0000918

Removed

Added

acinar cell of salivary gland http://purl.obolibrary.org/obo/CL_0002623

Removed

Added

acinar cell of sebaceous gland http://purl.obolibrary.org/obo/CL_0002140

Removed

Added

activated CD4-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000896

Removed

Added

activated CD8-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000906

Removed

Added

activated type II NK T cell http://purl.obolibrary.org/obo/CL_0000931

Removed

Added

adipocyte of breast http://purl.obolibrary.org/obo/CL_0002617

Removed

Added

adipocyte of omentum tissue http://purl.obolibrary.org/obo/CL_0002615

Removed

Added

adipose dendritic cell http://purl.obolibrary.org/obo/CL_0002462

Removed

Added

adipose macrophage http://purl.obolibrary.org/obo/CL_0002477

Removed

Added

alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000789

Removed

Added

alpha-beta intraepithelial T cell http://purl.obolibrary.org/obo/CL_0000797

Removed

Added

alternatively activated macrophage http://purl.obolibrary.org/obo/CL_0000890

Removed

Added

alveolar macrophage http://purl.obolibrary.org/obo/CL_0000583

Removed

Added

amniocyte http://purl.obolibrary.org/obo/CL_0002323

Removed

Added

angioblastic mesenchymal cell http://purl.obolibrary.org/obo/CL_0000566

Removed

Added

annulus pulposus cell http://purl.obolibrary.org/obo/CL_0002602

Removed

Added

antibody secreting cell http://purl.obolibrary.org/obo/CL_0000946

Removed

Added

arcuate artery cell http://purl.obolibrary.org/obo/CL_1001135

Removed

Added

arcuate artery endothelial cell http://purl.obolibrary.org/obo/CL_1001213

Removed

Added

arcuate vein cell http://purl.obolibrary.org/obo/CL_1001142

Removed

Added

astrocyte of the cerebellum http://purl.obolibrary.org/obo/CL_0002603

Removed

Added

astrocyte of the forebrain http://purl.obolibrary.org/obo/CL_0012000

Removed

Added

astrocyte of the spinal cord http://purl.obolibrary.org/obo/CL_0002606

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band form basophil http://purl.obolibrary.org/obo/CL_0000770

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band form eosinophil http://purl.obolibrary.org/obo/CL_0000774

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band form neutrophil http://purl.obolibrary.org/obo/CL_0000560

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basal cell of epidermis http://purl.obolibrary.org/obo/CL_0002187

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Added

basal cell of epithelium of lobular bronchiole http://purl.obolibrary.org/obo/CL_1000352

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Added

basal cell of epithelium of respiratory bronchiole http://purl.obolibrary.org/obo/CL_1000351

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Added

basal cell of epithelium of terminal bronchiole http://purl.obolibrary.org/obo/CL_1000350

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Added

basal cell of epithelium of trachea http://purl.obolibrary.org/obo/CL_1000348

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Added

basal cell of olfactory epithelium http://purl.obolibrary.org/obo/CL_0002169

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Added

basal cell of urothelium http://purl.obolibrary.org/obo/CL_1000486

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basophil http://purl.obolibrary.org/obo/CL_0000767

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basophil progenitor cell http://purl.obolibrary.org/obo/CL_0000613

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basophilic erythroblast http://purl.obolibrary.org/obo/CL_0000549

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basophilic metamyelocyte http://purl.obolibrary.org/obo/CL_0000769

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basophilic myeloblast http://purl.obolibrary.org/obo/CL_0000829

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basophilic myelocyte http://purl.obolibrary.org/obo/CL_0000614

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basophilic promyelocyte http://purl.obolibrary.org/obo/CL_0000830

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blood cell http://purl.obolibrary.org/obo/CL_0000081

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bone marrow cell http://purl.obolibrary.org/obo/CL_0002092

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bone marrow macrophage http://purl.obolibrary.org/obo/CL_0002476

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brush cell of trachea http://purl.obolibrary.org/obo/CL_0002207

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central memory CD4-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000904

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central memory CD8-positive, alpha-beta T cell http://purl.obolibrary.org/obo/CL_0000907

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central nervous system macrophage http://purl.obolibrary.org/obo/CL_0000878

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central nervous system pericyte http://purl.obolibrary.org/obo/CL_0002575

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cerebrospinal fluid secreting cell http://purl.obolibrary.org/obo/CL_0000686

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cholangiocyte http://purl.obolibrary.org/obo/CL_1000488

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chromaffin cell of adrenal gland http://purl.obolibrary.org/obo/CL_1000426

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chromaffin cell of ovary http://purl.obolibrary.org/obo/CL_1000465

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chromaffin cell of paraganglion http://purl.obolibrary.org/obo/CL_1000425

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ciliary muscle cell http://purl.obolibrary.org/obo/CL_1000443

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Added

class switched memory B cell http://purl.obolibrary.org/obo/CL_0000972

Removed

Added

@dosumis
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dosumis commented Jul 8, 2024

Thanks!

Seems like the vast majority are showing inference of removed axiom, e.g.

B cell http://purl.obolibrary.org/obo/CL_0000236
Removed
B cell SubClassOf lymphocyte of B lineage
is_inferred "true"
Added
B cell SubClassOf lymphocyte of B lineage

Is there any way to get a report of only those where that is not the case?

@anitacaron
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Only removed cases (not listed before)

common myeloid progenitor http://purl.obolibrary.org/obo/CL_0000049

Removed

common myeloid progenitor, CD34-positive http://purl.obolibrary.org/obo/CL_0001059

Removed

cystoblast http://purl.obolibrary.org/obo/CL_0000722

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egg cell http://purl.obolibrary.org/obo/CL_0000025

Removed

epithelial cell of Malassez http://purl.obolibrary.org/obo/CL_0002166

Removed

epithelial cell of distal tubule http://purl.obolibrary.org/obo/CL_0002305

Removed

epithelial cell of proximal tubule http://purl.obolibrary.org/obo/CL_0002306

Removed

erythroid progenitor cell http://purl.obolibrary.org/obo/CL_0000038

Removed

female gamete http://purl.obolibrary.org/obo/CL_0000675

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female germ line stem cell http://purl.obolibrary.org/obo/CL_0000022

Removed

germ cell http://purl.obolibrary.org/obo/CL_0000586

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lactocyte http://purl.obolibrary.org/obo/CL_0002325

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lung megakaryocyte http://purl.obolibrary.org/obo/CL_4033018

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lymphocyte of B lineage http://purl.obolibrary.org/obo/CL_0000945

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megakaryocyte http://purl.obolibrary.org/obo/CL_0000556

Removed

melanophage http://purl.obolibrary.org/obo/CL_0002060

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mesenchymal stem cell http://purl.obolibrary.org/obo/CL_0000134

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motile sperm cell http://purl.obolibrary.org/obo/CL_0011013

Removed

oligodendrocyte http://purl.obolibrary.org/obo/CL_0000128

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oocyte http://purl.obolibrary.org/obo/CL_0000023

Removed

paneth cell http://purl.obolibrary.org/obo/CL_0000510

Removed

paneth cell of anorectum http://purl.obolibrary.org/obo/CL_0009055

Removed

periarticular chondrocyte http://purl.obolibrary.org/obo/CL_0000742

Removed

placental epithelial cell http://purl.obolibrary.org/obo/CL_0002577

Removed

secondary spermatocyte http://purl.obolibrary.org/obo/CL_0000657

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seminiferous tubule epithelial cell http://purl.obolibrary.org/obo/CL_0002625

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sperm http://purl.obolibrary.org/obo/CL_0000019

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spermatid http://purl.obolibrary.org/obo/CL_0000018

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syncytiotrophoblast cell http://purl.obolibrary.org/obo/CL_0000525

Removed

synovial cell http://purl.obolibrary.org/obo/CL_0000214

Removed

trophoblast cell http://purl.obolibrary.org/obo/CL_0000351

Removed

Only added cases (not listed before)

epithelial cell of nasolacrimal duct http://purl.obolibrary.org/obo/CL_1000437

Added

erythroid progenitor cell, mammalian http://purl.obolibrary.org/obo/CL_0001066

Added

eye photoreceptor cell http://purl.obolibrary.org/obo/CL_0000287

Added

fraction D precursor B cell http://purl.obolibrary.org/obo/CL_0002052

Added

mesenchymal stem cell of adipose tissue http://purl.obolibrary.org/obo/CL_0002570

Added

@dosumis
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dosumis commented Jul 8, 2024

@anitacaron - Awesome. Thanks!

I think it will be sufficient to review "Only removed cases (not listed before)" and:
(a) check if the inference is still present but now redundant
(b) add back by hand if inference not present (discarding any that are obviously incorrect)

@aleixpuigb would you be able to take a look?

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github-actions bot commented Aug 8, 2024

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR editor will be allowed to proceed with merging without explicit approval, should they wish to do so.

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Remove all SubClassOf axioms annotated with is_inferred:true
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