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cff-version: 1.2.0 | ||
type: software | ||
title: bioframe | ||
license: MIT | ||
repository-code: 'https://github.com/open2c/bioframe' | ||
message: >- | ||
If you use this software, please cite it using the | ||
metadata from this file. | ||
authors: | ||
- given-names: Nezar | ||
family-names: Abdennur | ||
orcid: 'https://orcid.org/0000-0001-5814-0864' | ||
- given-names: Geoffrey | ||
family-names: Fudenberg | ||
orcid: "https://orcid.org/0000-0001-5905-6517" | ||
- given-names: Ilya | ||
family-names: Flyamer | ||
orcid: "https://orcid.org/0000-0002-4892-4208" | ||
- given-names: Aleksandra | ||
family-names: Galitsyna | ||
orcid: "https://orcid.org/0000-0001-8969-5694" | ||
- given-names: Anton | ||
family-names: Goloborodko | ||
orcid: "https://orcid.org/0000-0002-2210-8616" | ||
- given-names: Maxim | ||
family-names: Imakaev | ||
orcid: "https://orcid.org/0000-0002-5320-2728" | ||
- given-names: Sergey | ||
family-names: Venev | ||
orcid: "https://orcid.org/0000-0002-1507-7460" | ||
abstract: >- | ||
Bioframe is a library to enable flexible and performant | ||
operations on genomic interval data frames in Python. | ||
keywords: | ||
- bioinformatics | ||
- genomics | ||
- ranges | ||
- intervals | ||
- dataframes | ||
- pandas | ||
- numpy | ||
- Python | ||
identifiers: | ||
- type: doi | ||
value: 10.5281/zenodo.3897573 | ||
description: Zenodo | ||
- type: doi | ||
value: 10.1101/2022.02.16.480748 | ||
description: bioRxiv | ||
preferred-citation: | ||
type: article | ||
title: "Bioframe: Operations on Genomic Intervals in Pandas Dataframes" | ||
authors: | ||
- given-names: Open2C | ||
- given-names: Nezar | ||
family-names: Abdennur | ||
orcid: 'https://orcid.org/0000-0001-5814-0864' | ||
- given-names: Geoffrey | ||
family-names: Fudenberg | ||
orcid: "https://orcid.org/0000-0001-5905-6517" | ||
- given-names: Ilya | ||
family-names: Flyamer | ||
orcid: "https://orcid.org/0000-0002-4892-4208" | ||
- given-names: Aleksandra | ||
family-names: Galitsyna | ||
orcid: "https://orcid.org/0000-0001-8969-5694" | ||
- given-names: Anton | ||
family-names: Goloborodko | ||
orcid: "https://orcid.org/0000-0002-2210-8616" | ||
- given-names: Maxim | ||
family-names: Imakaev | ||
orcid: "https://orcid.org/0000-0002-5320-2728" | ||
- given-names: Sergey | ||
family-names: Venev | ||
orcid: "https://orcid.org/0000-0002-1507-7460" | ||
journal: bioRxiv | ||
year: 2022 | ||
doi: "10.1101/2022.02.16.480748" |