Fix issue in read_bam implementation, it got the wrong contig name

open2c · May 1, 2024 · c2fbb0b · c2fbb0b
1 parent 1425cbe
commit c2fbb0b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bioframe/io/fileops.py b/bioframe/io/fileops.py
@@ -243,7 +243,7 @@ def read_bam(fp, chrom=None, start=None, end=None):
             (
                 s.qname,
                 s.flag,
-                s.rname,
+                s.reference_name,
                 s.pos,
                 s.mapq,
                 s.cigarstring if s.mapq != 0 else np.nan,