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Don't fully delete output directories (#1183) #2638

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Job	Run time
Integration Tests (0.20.0)	32s
test (3.9, ubuntu-latest)	1m 4s
Integration Tests	30s
test_min_deps (ubuntu-latest)	39s
test (3.9, macos-latest)	57s
test_min_deps (macos-latest)	50s
test (3.9, windows-latest)	1m 42s
test_min_deps (windows-latest)	1m 2s
test (3.10, ubuntu-latest)	1m 11s
test (3.10, macos-latest)	59s
test (3.10, windows-latest)	1m 32s
test (3.11, ubuntu-latest)	1m 0s
test (3.11, macos-latest)	41s
test (3.11, windows-latest)	1m 20s
test (3.12, ubuntu-latest)	1m 9s
test (3.12, macos-latest)	40s
test (3.12, windows-latest)	1m 27s
test (3.13, ubuntu-latest)	1m 24s
test (3.13, macos-latest)	40s
test (3.13, windows-latest)	2m 21s
Combine & check coverage	10s
	21m 50s