Repositories list

• aind-foraging-behavior-bonsai-trigger-pipeline

  Public
  Python

  •

  MIT License

  •0•1•1•0•Updated Dec 28, 2024Dec 28, 2024

• Aind.Behavior.ForceForaging

  Public
  A repository for the aind-force-foraging experiment

  aind-behavior

  C#

  •

  MIT License

  •0•1•5•1•Updated Dec 28, 2024Dec 28, 2024

• Aind.Behavior.Telekinesis

  Public
  Task implemention of brain-computer interface experiments

  aind-behavior

  C#

  •

  MIT License

  •0•0•1•0•Updated Dec 28, 2024Dec 28, 2024

• Aind.Behavior.CookieCutter.Template

  Public
  A cookiecutter template for Aind.Behavior repositories

  aind-behavior

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 28, 2024Dec 28, 2024

• Aind.Behavior.VrForaging

  Public
  Task implemention of VR Foraging experiment

  aind-behavior

  C#

  •

  MIT License

  •0•2•18•1•Updated Dec 28, 2024Dec 28, 2024

• aind-behavior-curriculum

  Public
  Starter repository for behavior base primitives.

  Python

  •

  MIT License

  •0•0•19•10•Updated Dec 28, 2024Dec 28, 2024

• aind-slurm-rest

  Public
  Auto-generated python code to interface with the slurm cluster

  MIT License

  •0•0•1•0•Updated Dec 27, 2024Dec 27, 2024

• Aind.Behavior.VideoEncodingBenchmarks

  Public
  A repository with code for benchmarking online video acquisition/encoding pipelines

  aind-behavior

  C#

  •

  MIT License

  •0•0•2•0•Updated Dec 27, 2024Dec 27, 2024

• Aind.Behavior.CoreAnalysis

  Public
  A repository with core primitives for analysis shared across `Aind.Behavior` tasks

  aind-behavior

  Python

  •

  MIT License

  •0•0•5•0•Updated Dec 27, 2024Dec 27, 2024

• Aind.Behavior.ExperimentLauncher

  Public
  Source for for a minimal framework that can be used to build experimental interfaces

  aind-behavior

  Python

  •

  MIT License

  •0•0•10•2•Updated Dec 27, 2024Dec 27, 2024

• Aind.Behavior.GitHubActions

  Public
  A repository with reusable github actions

  aind-behavior

  MIT License

  •0•0•0•0•Updated Dec 27, 2024Dec 27, 2024

• Aind.Behavior.Services

  Public
  A repository containing code for data acquisition and processing for AIND behavior rigs.

  aind-behavior

  C#

  •

  MIT License

  •0•0•10•3•Updated Dec 27, 2024Dec 27, 2024

• Aind.Behavior.Device.Olfactometer

  Public
  A repository for calibration and configuration of the harp olfactometer device

  aind-behavior

  C#

  •

  MIT License

  •0•0•4•0•Updated Dec 27, 2024Dec 27, 2024

• aind-metadata-service

  Public
  Service to retrieve Labtracks/Sharepoint info using a REST API

  aind-core-servicesaind-deploy-services

  Python

  •

  MIT License

  •1•3•19•1•Updated Dec 26, 2024Dec 26, 2024

• dynamicrouting-duplicate-probe-info

  Public
  Scan S3 for ecephys data dirs with duplicate probe data (recorded on two Record Nodes) and get info on paths that need correcting.

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 26, 2024Dec 26, 2024

• exaspim-control

  Public
  Python

  •

  MIT License

  •1•1•3•0•Updated Dec 25, 2024Dec 25, 2024

• Aind.Behavior.CurriculumTemplate

  Public
  A template of a repository to be used for defining, running and interfacing with a behavior curriculum

  aind-behavior

  Python

  •

  MIT License

  •0•0•2•0•Updated Dec 25, 2024Dec 25, 2024

• aind-ophys-oasis-event-detection

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 25, 2024Dec 25, 2024

• aind-ophys-dff

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 25, 2024Dec 25, 2024

• aind-ophys-motion-correction

  Public
  Python

  •

  MIT License

  •0•1•13•0•Updated Dec 25, 2024Dec 25, 2024

• aind-ophys-extraction-suite2p

  Public
  Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.

  Python

  •

  MIT License

  •0•0•2•0•Updated Dec 25, 2024Dec 25, 2024

• aind-ophys-decrosstalk-roi-images

  Public
  Python

  •

  MIT License

  •0•0•11•0•Updated Dec 25, 2024Dec 25, 2024

• aind-multiplane-ophys-pipeline-without-splitting

  Public
  Nextflow

  •

  MIT License

  •0•0•1•2•Updated Dec 25, 2024Dec 25, 2024

• aind-capsule-ephys-dynamicrouting-LFP-subsampling

  Public
  Performs Temporal and Spatial Subsampling of Local Field Potential (LFP). Results have a zarr output per probe

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 24, 2024Dec 24, 2024

• aind-metadata-mapper

  Public
  Repository to help gather and map metadata from different sources

  aind-core-services

  Python

  •

  MIT License

  •2•0•22•0•Updated Dec 24, 2024Dec 24, 2024

• foraging-behavior-browser

  Public
  Foraging behavior browser (streamlit)

  Python

  •

  MIT License

  •2•2•14•0•Updated Dec 24, 2024Dec 24, 2024

• dynamic-foraging-task

  Public
  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python

  •

  MIT License

  •4•6•202•7•Updated Dec 24, 2024Dec 24, 2024

• view

  Public
  Model/View for exa-spim

  Python

  •3•4•11•1•Updated Dec 24, 2024Dec 24, 2024

• aind-dynamic-foraging-data-utils

  Public
  Tools for the analysis of behavior and neural data from the dynamic foraging task

  Python

  •

  MIT License

  •0•2•23•0•Updated Dec 24, 2024Dec 24, 2024

• aind-slims-api

  Public
  AIND-specific access to data stored in SLIMS

  Python

  •

  MIT License

  •1•0•5•2•Updated Dec 24, 2024Dec 24, 2024