Repositories list

• metagenomeSeq

  Public
  Statistical analysis for sparse high-throughput sequencing

  R

  •21•69•30•0•Updated Dec 17, 2024Dec 17, 2024

• scTreeViz

  Public
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions

  single-cell-rna-seqtreevizhierarchy

  R

  •3•10•1•0•Updated Mar 10, 2022Mar 10, 2022

• iDA

  Public
  iDA: dimensionality reduction for latent structure discovery

  rna-seq-analysisscrna-seq-analysisrstats-package

  R

  •

  Other

  •4•4•0•0•Updated Jul 19, 2021Jul 19, 2021

• scTreeViz-vignette

  Public
  0•0•0•0•Updated May 3, 2021May 3, 2021

• yanagi

  Public
  Transcript Segment Library Construction for RNA-Seq Quantification

  Python

  •3•8•2•1•Updated Feb 11, 2021Feb 11, 2021

• antiProfiles

  Public
  This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/antiProfiles.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=antiProfiles.

  R

  •1•0•0•0•Updated Apr 2, 2020Apr 2, 2020

• metagenomeFeatures

  Public
  R package for annotating metagenomic datasets with taxonomic information

  R

  •5•10•11•0•Updated Feb 11, 2020Feb 11, 2020

• MicrobiomeExperiment

  Public
  Bioconductor defining a summarizedExperiment class (metagenomeSE) for metagenomic data.

  R

  •4•1•12•0•Updated Dec 18, 2019Dec 18, 2019

• Wrench

  Public
  Compositional correction and normalization for sparse, under-sampled count data

  R

  •1•6•2•0•Updated Feb 25, 2019Feb 25, 2019

• ribosomaldatabaseproject11.5MgDb

  Public
  Bioconductor annotation package for RDP 16S rRNA database version 11.5

  R

  •1•0•0•0•Updated Oct 28, 2018Oct 28, 2018

• silva128.1MgDb

  Public
  SILVA SSR rRNA release 128.1 Annotation Data

  R

  •1•0•0•0•Updated Oct 5, 2018Oct 5, 2018

• greengenes13.5MgDb

  Public
  R

  •3•1•0•0•Updated May 1, 2018May 1, 2018

• epiviz-app-demo

  Public
  HTML

  •0•0•0•0•Updated Mar 15, 2017Mar 15, 2017

• epiviz-environment

  Public
  HTML

  •0•0•0•0•Updated Mar 13, 2017Mar 13, 2017

• epivizGviz

  Public
  R

  •0•0•0•0•Updated Sep 27, 2016Sep 27, 2016

• workshopBioc2016

  Public
  R

  •

  Other

  •3•0•0•0•Updated Jul 31, 2016Jul 31, 2016

• bioc2016Addendum

  Public
  R

  •

  Other

  •2•0•0•0•Updated Jun 25, 2016Jun 25, 2016

• ISCB_DC_workshop

  Public
  HTML

  •0•0•0•0•Updated Jun 15, 2016Jun 15, 2016

• methylation_protocol

  Public
  HTML

  •0•1•0•0•Updated Jun 10, 2016Jun 10, 2016

• MicrobiomeSC

  Public
  MicrobiomeSC is a metagenomics analysis suite using a secure multi-party computation technique known as garbled circuits.

  Java

  •1•2•0•0•Updated Apr 6, 2016Apr 6, 2016

• metagenomeSeq-1

  Public
  This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/metagenomeSeq.html Contributions: https://github.com/nosson/metagenomeSeq/. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=metagenomeSeq or https://github.com/nosson/metagenomeSeq/issues.

  R

  •2•0•0•0•Updated Dec 15, 2015Dec 15, 2015

• qsmooth

  Public
  Normalization of high-throughput genomics data

  R

  •3•1•0•0•Updated Dec 7, 2015Dec 7, 2015