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    72 repositories

    • braingeneerspy

      Public
      Python package for Braingeneers data loading, analysis, and IoT.
      Python
      •
      MIT License
      •4•17•3•4•Updated Dec 23, 2024Dec 23, 2024

    • sims-web

      Public
      Attempt to run SIMS inference in the browser
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Dec 23, 2024Dec 23, 2024

    • Protosequences

      Public
      Analysis code for our manuscript "Protosequences in brain organoids model intrinsic states in the developing cortex"
      Jupyter Notebook
      •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

    • mission_control

      Public
      Contains the full stack of braingeneers services as well as start/stop procedures.
      Vue
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • GcodeGoblin

      Public
      Tool to manipulate G-Code for heat embossing.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • braindance

      Public
      Making neural stimulation easier
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • SIMS

      Public
      SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
      Python
      •
      MIT License
      •6•4•1•0•Updated Nov 30, 2024Nov 30, 2024

    • human_hippocampus

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•2•0•Updated Nov 19, 2024Nov 19, 2024

    • AndrewsGengVoitiukEtAl_SourceCode

      Public
      Source Code for our MS "Optogenetic modulation of epileptiform activity in human brain tissue"
      Jupyter Notebook
      •0•3•0•0•Updated Sep 27, 2024Sep 27, 2024

    • cellxgene-ingest

      Public
      Download scRNASeq from CZ Cell x Gene Census upload to NRP S3 optimized for ML
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 18, 2024Sep 18, 2024

    • search

      Public
      Prototype search engine for experiment object store
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • SpikeData

      Public
      Testing a refactor of the SpikeData class and associated analysis out from braingeneerspy.
      Python
      •
      MIT License
      •0•1•0•0•Updated May 29, 2024May 29, 2024

    • integrated-system-v1-paper

      Public
      Supplementary Material for: "A feedback-driven IoT microfluidic, electrophysiology, and imaging platform for brain organoid studies"
      Python
      •
      Other
      •0•0•0•0•Updated May 15, 2024May 15, 2024

    • IOT_Education_Lab_on_Chip_Paper

      Public
      We wrote educational programs for remote IoT and local IoT outreach in Bolivia.
      Python
      •0•1•0•0•Updated May 14, 2024May 14, 2024

    • things

      Public
      Infrastructure to manage in lab linux endpoints collecting data and uploading to the cloud
      JavaScript
      •
      Apache License 2.0
      •0•0•2•1•Updated Apr 23, 2024Apr 23, 2024

    • piphys

      Public
      Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments
      C++
      •
      MIT License
      •4•15•1•0•Updated Feb 20, 2024Feb 20, 2024

    • braingeneers-docker-images

      Public
      Repository for braingeneers docker images
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 30, 2024Jan 30, 2024

    • seruotchi-supplement

      Public
      0•1•0•0•Updated Jan 29, 2024Jan 29, 2024

    • IOT_Education_Stem_Cell_Paper

      Public
      Statistics done for Mo's IOT education paper
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 11, 2023Nov 11, 2023

    • research-template

      Public template
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

    • smart_open

      Public
      Utils for streaming large files (S3, HDFS, gzip, bz2...)
      Python
      •
      MIT License
      •382•0•0•0•Updated Oct 28, 2023Oct 28, 2023

    • test

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • wetai

      Public
      Python package for the wetAI web platform
      machine-learningjupyterneurosciencewetaibraingeneers
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 22, 2023Sep 22, 2023

    • Braingeneers-Datahub

      Public
      Vue
      •0•1•0•0•Updated Aug 24, 2023Aug 24, 2023

    • valeskas-code

      Public
      HTML
      •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • Blob-Measuring-with-Computer-Vision

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • Optogenetic_Modulation_of_Epileptiform_Data

      Public
      A repository for explaining the procedure for accessing data from an experiment.
      0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • WetAI_Docker

      Public
      This code creates the docker container for the WetAI interface
      JavaScript
      •1•1•0•0•Updated Apr 13, 2023Apr 13, 2023

    • Plotly-Device-Console

      Public
      Console for viewing and interacting with devices in the Braingeneers shadows database
      Python
      •0•0•0•0•Updated Mar 14, 2023Mar 14, 2023

    • images

      Public
      Viewer for images generated by the picroscope
      Vue
      •0•0•0•29•Updated Mar 2, 2023Mar 2, 2023