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@cnag-aat CNAG Assembly and Annotation Team

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    13 repositories

    • ERGA-Status

      Public
      Python
      •1•1•0•0•Updated Dec 13, 2024Dec 13, 2024

    • ERGA-submission

      Public
      Python
      •4•1•0•0•Updated Dec 5, 2024Dec 5, 2024

    • scripts

      Public
      CNAG AAT scripts not guaranteed to work elsewhere
      Perl
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • FOAM

      Public
      FOAM (Flye ONT Assembly of Mitogenomes). Is a pipeline we are using to assemble the mitogenome of different organisms using ONT and Illumina reads. As each genome and sample poses different challenges is in continuous development
      Python
      •2•1•0•0•Updated Oct 25, 2024Oct 25, 2024

    • Annotation_AAT

      Public
      Structural genome annotation pipeline used in the CNAG AA Team for eukaryote genomes.
      Python
      •
      MIT License
      •1•3•0•0•Updated Apr 16, 2024Apr 16, 2024

    • RNA_4annotation.Snakemake

      Public
      Python
      •1•0•0•0•Updated Feb 7, 2024Feb 7, 2024

    • assembly_pipeline

      Public
      Pipeline used for de novo genome assembly @cnag
      Python
      •
      MIT License
      •3•6•0•0•Updated Feb 1, 2024Feb 1, 2024

    • ERGA-pipelines

      Public
      Nextflow
      •
      MIT License
      •8•0•0•0•Updated Nov 24, 2023Nov 24, 2023

    • EARs

      Public
      The ERGA Assembly Reports repository
      MIT License
      •23•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • incredble

      Public
      Python
      •0•1•0•0•Updated Jul 12, 2023Jul 12, 2023

    • AACRE

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 7, 2022Oct 7, 2022

    • CBP

      Public
      2•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • Repeat_annotation_pipeline

      Public
      Pipeline used in the CNAG AATEAM to annotate repeats in genome assemblies
      Python
      •0•0•0•0•Updated Mar 1, 2021Mar 1, 2021