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@cnag-aat

CNAG Assembly and Annotation Team

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  1. assembly_pipeline assembly_pipeline Public

    Pipeline used for de novo genome assembly @CNAG

    Python 6 3

  2. Annotation_AAT Annotation_AAT Public

    Structural genome annotation pipeline used in the CNAG AA Team for eukaryote genomes.

    Python 3 1

  3. incredble incredble Public

    Python 1

  4. AACRE AACRE Public

    Python 1

  5. ERGA-Status ERGA-Status Public

    Python 1 1

  6. ERGA-submission ERGA-submission Public

    Forked from ERGA-consortium/ERGA-submission

    Python 1 1

Repositories

Showing 10 of 13 repositories
  • ERGA-Status Public
    cnag-aat/ERGA-Status’s past year of commit activity
    Python 1 1 0 0 Updated Dec 13, 2024
  • ERGA-submission Public Forked from ERGA-consortium/ERGA-submission
    cnag-aat/ERGA-submission’s past year of commit activity
    Python 1 4 0 0 Updated Dec 5, 2024
  • scripts Public

    CNAG AAT scripts not guaranteed to work elsewhere

    cnag-aat/scripts’s past year of commit activity
    Perl 0 0 0 0 Updated Nov 11, 2024
  • FOAM Public

    FOAM (Flye ONT Assembly of Mitogenomes). Is a pipeline we are using to assemble the mitogenome of different organisms using ONT and Illumina reads. As each genome and sample poses different challenges is in continuous development

    cnag-aat/FOAM’s past year of commit activity
    Python 1 2 0 0 Updated Oct 25, 2024
  • Annotation_AAT Public

    Structural genome annotation pipeline used in the CNAG AA Team for eukaryote genomes.

    cnag-aat/Annotation_AAT’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Apr 16, 2024
  • RNA_4annotation.Snakemake Public
    cnag-aat/RNA_4annotation.Snakemake’s past year of commit activity
    Python 0 1 0 0 Updated Feb 7, 2024
  • assembly_pipeline Public

    Pipeline used for de novo genome assembly @cnag

    cnag-aat/assembly_pipeline’s past year of commit activity
    Python 6 MIT 3 0 0 Updated Feb 1, 2024
  • ERGA-pipelines Public Forked from ERGA-consortium/pipelines
    cnag-aat/ERGA-pipelines’s past year of commit activity
    Nextflow 0 MIT 8 0 0 Updated Nov 24, 2023
  • EARs Public Forked from ERGA-consortium/EARs

    The ERGA Assembly Reports repository

    cnag-aat/EARs’s past year of commit activity
    0 MIT 23 0 0 Updated Oct 10, 2023
  • incredble Public
    cnag-aat/incredble’s past year of commit activity
    Python 1 0 0 0 Updated Jul 12, 2023
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