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    • Visualize, share and annotate your large 3D images online
      TypeScript
      GNU Affero General Public License v3.0
      2413145827Updated Dec 23, 2024Dec 23, 2024
    • An implementation of chunked, compressed, N-dimensional arrays for Python.
      Python
      MIT License
      290000Updated Dec 22, 2024Dec 22, 2024
    • Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
      Python
      1223684Updated Dec 19, 2024Dec 19, 2024
    • Matlab interface to the siibra toolsuite
      MATLAB
      Apache License 2.0
      2000Updated Dec 16, 2024Dec 16, 2024
    • fossildb

      Public
      Versioned Key-Value Store with RocksDB backend and gRPC API
      Scala
      MIT License
      01340Updated Dec 16, 2024Dec 16, 2024
    • Slurm packages and dockerfiles.
      Dockerfile
      0000Updated Dec 4, 2024Dec 4, 2024
    • Functionality shared across all n5
      Java
      BSD 2-Clause "Simplified" License
      4000Updated Nov 21, 2024Nov 21, 2024
    • n5-zarr

      Public
      Zarr filesystem backend for N5
      Java
      BSD 2-Clause "Simplified" License
      15000Updated Nov 21, 2024Nov 21, 2024
    • Java
      MIT License
      0100Updated Nov 20, 2024Nov 20, 2024
    • n5-blosc

      Public
      Blosc compression for N5
      Java
      BSD 2-Clause "Simplified" License
      5000Updated Nov 20, 2024Nov 20, 2024
    • Python
      0000Updated Nov 15, 2024Nov 15, 2024
    • Docker images used within scalableminds 🐳
      Python
      MIT License
      1131Updated Nov 5, 2024Nov 5, 2024
    • zarrita

      Public
      Python
      MIT License
      61911Updated Sep 28, 2024Sep 28, 2024
    • Gallery of OME-Zarr datasets from WEBKNOSSOS
      JavaScript
      MIT License
      2000Updated Sep 25, 2024Sep 25, 2024
    • Java implementation of the Zarr Specification
      Java
      MIT License
      9100Updated Aug 30, 2024Aug 30, 2024
    • wknml

      Public archive
      Python library for working with webKnossos NML files
      Python
      MIT License
      3030Updated Aug 7, 2024Aug 7, 2024
    • Efficient 3D volume storage format for webKnossos and analyses
      Rust
      MIT License
      3890Updated Jul 11, 2024Jul 11, 2024
    • Markdown parser, done right. Commonmark support, extensions, syntax plugins, high speed - all in one. Gulp and metalsmith plugins available. Used by Facebook, Docusaurus and many others! Use https://github.com/breakdance/breakdance for HTML-to-markdown conversion. Use https://github.com/jonschlinkert/markdown-toc to generate a table of contents.
      JavaScript
      MIT License
      373000Updated May 17, 2024May 17, 2024
    • Runtime type checking for React props and similar objects
      JavaScript
      MIT License
      358001Updated May 17, 2024May 17, 2024
    • Generate invoices from YAML files using puppeteer.
      HTML
      52201Updated Mar 29, 2024Mar 29, 2024
    • trigger

      Public template
      Abstract React Trigger
      TypeScript
      MIT License
      226000Updated Mar 11, 2024Mar 11, 2024
    • n5-http

      Public
      N5 library implementation using HTTP(S) backend.
      Java
      BSD 2-Clause "Simplified" License
      6000Updated Feb 2, 2024Feb 2, 2024
    • Zarr core protocol for storage and retrieval of N-dimensional typed arrays
      Other
      29000Updated Jan 8, 2024Jan 8, 2024
    • zeps

      Public
      Zarr Enhancement Proposals
      Ruby
      Creative Commons Zero v1.0 Universal
      16000Updated Nov 2, 2023Nov 2, 2023
    • 0000Updated Aug 2, 2023Aug 2, 2023
    • ngff

      Public
      Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
      Bikeshed
      Other
      42000Updated Jul 20, 2023Jul 20, 2023
    • Supplementary materials for the publication "Deep learning-based automated lesion segmentation on mouse stroke magnetic resonance images"
      Jupyter Notebook
      Other
      0100Updated Jul 20, 2023Jul 20, 2023
    • webknossos-connect

      Public archive
      Connect webKnossos with existing datasets (BossDB, Neuroglancer Precomputed)
      Python
      GNU Affero General Public License v3.0
      00149Updated Apr 27, 2023Apr 27, 2023
    • boltons

      Public
      🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.
      Python
      Other
      353000Updated Feb 20, 2023Feb 20, 2023
    • inducoapi

      Public
      A simple python module to generate OpenAPI Description Documents by supplying request/response bodies.
      Python
      Apache License 2.0
      3000Updated Jan 8, 2023Jan 8, 2023