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Playground Payload and Schema Updates #176

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Binary file added .DS_Store
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this file needn't be included.

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4 changes: 3 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -35,4 +35,6 @@ build/


## others
run.sh
run.sh
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This prevents that other file being readded later

Suggested change
run.sh
**/.DS_Store
run.sh

.ipynb_checkpoints/data_generate-checkpoint.ipynb
data_generate.ipynb
Binary file added .gitignore.swp
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2 changes: 1 addition & 1 deletion example-data/sequencing_alignment_sample_schema.json
Original file line number Diff line number Diff line change
Expand Up @@ -347,7 +347,7 @@
"enum":[
"Accessory sinuses",
"Adrenal gland",
"Anus and anal canal",
"Pancreas",
"Base of tongue",
"Bladder",
"Bones, joints and articular cartilage of limbs",
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2 changes: 1 addition & 1 deletion example-data/sequencing_experiment_sample_schema.json
Original file line number Diff line number Diff line change
Expand Up @@ -274,7 +274,7 @@
"enum":[
"Accessory sinuses",
"Adrenal gland",
"Anus and anal canal",
"Pancreas",
"Base of tongue",
"Bladder",
"Bones, joints and articular cartilage of limbs",
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2 changes: 1 addition & 1 deletion example-data/variant_calling_sample_schema.json
Original file line number Diff line number Diff line change
Expand Up @@ -158,7 +158,7 @@
"enum":[
"Accessory sinuses",
"Adrenal gland",
"Anus and anal canal",
"Pancreas",
"Base of tongue",
"Bladder",
"Bones, joints and articular cartilage of limbs",
Expand Down
Binary file added playground-data/.DS_Store
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236 changes: 236 additions & 0 deletions playground-data/arranger-metadata/aggs-state.json
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Think we should hold back on adding this arranger-metadata folder for now.

Original file line number Diff line number Diff line change
@@ -0,0 +1,236 @@
[
{
"field": "analysis__first_published_at",
"active": true,
"show": false,
"__typename": "AggState"
},
{
"field": "analysis__published_at",
"active": true,
"show": false,
"__typename": "AggState"
},
{
"field": "analysis__updated_at",
"active": true,
"show": false,
"__typename": "AggState"
},
{
"field": "study_id",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "analysis__analysis_type",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "donors__gender",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "donors__specimens__samples__sample_type",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "donors__specimens__specimen_type",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "donors__specimens__specimen_tissue_source",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "donors__specimens__tumour_normal_designation",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "data_type",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "file_type",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "file_access",
"active": true,
"show": true,
"__typename": "AggState"
},
{
"field": "repositories__url",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "analysis__analysis_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "analysis__analysis_state",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "analysis__analysis_version",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "analysis__experiment",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__donor_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__specimens__samples__matched_normal_submitter_sample_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__specimens__samples__sample_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__specimens__samples__submitter_sample_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__specimens__specimen_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__specimens__submitter_specimen_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "donors__submitter_donor_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__index_file__file_type",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__index_file__md5sum",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__index_file__name",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__index_file__object_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__index_file__size",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__md5sum",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__name",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file__size",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "file_autocomplete",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "object_id",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "repositories__code",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "repositories__country",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "repositories__name",
"active": false,
"show": false,
"__typename": "AggState"
},
{
"field": "repositories__organization",
"active": false,
"show": false,
"__typename": "AggState"
}
]
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