R package for TArgeted Raw Data Integration In Spectrometry
Make sure R (version >= 4.4.0) is installed on your computer:
https://cloud.r-project.org/index.html
For Windows users, Rtools should be installed as well:
https://cran.r-project.org/bin/windows/Rtools/rtools44/rtools.html
For Mac users, please install Xcode and a GNU Fortran compiler, see: https://mac.r-project.org/tools/index.html For Xcode, you can run this line in your Mac OS terminal:
sudo xcode-select --install
In R, run:
if (!require("devtools", quietly = TRUE))
install.packages("devtools")
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
devtools::install_github("pablovgd/TARDIS",build_vignettes = TRUE,
repos=c('http://cran.us.r-project.org',"http://bioconductor.org/packages/3.19/bioc"),
dependencies=TRUE, type="source")
Load the package:
library(TARDIS)
Read the vignette for a tutorial on how to use TARDIS
RShowDoc("gui_tutorial",package = "TARDIS")
To launch the GUI in R:
runTardis()
TARDIS is licensed under the GPLv3
As a summary, the GPLv3 license requires attribution, inclusion of copyright and license information, disclosure of source code and changes. Derivative work must be available under the same terms.
© Pablo Vangeenderhuysen (2024)