fix issue #1716 #627
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
branches: [main, master] | |
pull_request: | |
branches: [main, master] | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
# - {os: macOS-latest, r: 'release', rtools: ''} | |
- {os: windows-latest, r: 'release', rtools: '42'} | |
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release', rtools: ''} | |
- {os: ubuntu-latest, r: 'release', rtools: ''} | |
- {os: ubuntu-latest, r: 'oldrel-1', rtools: ''} | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
R_KEEP_PKG_SOURCE: yes | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: n1hility/cancel-previous-runs@v2 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/[email protected] | |
with: | |
r-version: ${{ matrix.config.r }} | |
rtools-version: ${{ matrix.config.rtools }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
use-public-rspm: true | |
# As cmdstanr is not yet on CRAN, configure the action to only install the | |
# 'Depends' packages by default and then manually specify the 'Suggests' | |
# packages that are needed for R CMD CHECK | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
dependencies: NA | |
extra-packages: | | |
R.rsp | |
knitr | |
rcmdcheck | |
rmarkdown | |
lme4 | |
mice | |
BH | |
MCMCglmm | |
ape | |
stan-dev/cmdstanr | |
RcppEigen | |
testthat | |
emmeans | |
projpred | |
RWiener | |
rtdists | |
extraDistr | |
spdep | |
mnormt | |
splines2 | |
arm | |
statmod | |
diffobj | |
- name: Build Cmdstan | |
run: | | |
cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
cmdstanr::install_cmdstan(cores = parallel::detectCores()) | |
shell: Rscript {0} | |
- uses: r-lib/actions/check-r-package@v2 | |
with: | |
build_args: 'c("--no-manual", "--no-build-vignettes")' | |
args: 'c("--no-manual", "--as-cran", "--ignore-vignettes")' |